PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100031230221

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

G2-like

Protein Properties

Length: 380aa MW: 42383.3 Da PI: 6.4548

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100031230221	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	89.9	2.3e-28	187	247	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGse......kAtPktilelmkvkgLtlehvkSHLQkYRl 55 k r+rWt++LH+rFve+v++LGG++ +AtPk+il+lm+ +gLt+ hvkSHLQkYR Ote100031230221\|100031230221 187 KSRIRWTQDLHDRFVECVNRLGGPDtttyvtEATPKQILKLMDTEGLTIFHVKSHLQKYRN 247 68*******************98444444699************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.5E-26	184	248	IPR009057	Homeodomain-like
SuperFamily	SSF46689	9.68E-15	184	247	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.6E-21	187	248	IPR006447	Myb domain, plants
Pfam	PF00249	1.5E-7	191	246	IPR001005	SANT/Myb domain
Pfam	PF14379	5.9E-18	279	326	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 380 aa Download sequence Send to blast
MKGIQHNLGS YSGDFPDISP QSYPAQQQSA SNQQHTRWNA GTIIGRIGSP AAAFCATEIA 60 MGLSHYDFPQ SDNLYPTKQT FHPSATHGLF GGSPARNEAD SQNYHGGSYR NHFINPSERE 120 QILHLKNKLL GDLDVSDGRS PSVSLDANQE LEVPQNLYAP HLLQFGRCLS SASMNSSSSP 180 AAVTSHKSRI RWTQDLHDRF VECVNRLGGP DTTTYVTEAT PKQILKLMDT EGLTIFHVKS 240 HLQKYRNAKY MPESVEAAAK AEKKTNMNNE AQIDIKTGVQ LKEALQLQLD VQMRLHEQLE 300 IQQNLQVRIE EQSKQLKMMF DQQQKTTTNL AETNHANNIC PNANSLSTTV EDPEILVLDG 360 SDDDVVMLSK ISQKKEGNFY

Sequence ? help Back to Top

Protein Sequence Length: 380 aa Download sequence Send to blast

MKGIQHNLGS YSGDFPDISP QSYPAQQQSA SNQQHTRWNA GTIIGRIGSP AAAFCATEIA  60
MGLSHYDFPQ SDNLYPTKQT FHPSATHGLF GGSPARNEAD SQNYHGGSYR NHFINPSERE  120
QILHLKNKLL GDLDVSDGRS PSVSLDANQE LEVPQNLYAP HLLQFGRCLS SASMNSSSSP  180
AAVTSHKSRI RWTQDLHDRF VECVNRLGGP DTTTYVTEAT PKQILKLMDT EGLTIFHVKS  240
HLQKYRNAKY MPESVEAAAK AEKKTNMNNE AQIDIKTGVQ LKEALQLQLD VQMRLHEQLE  300
IQQNLQVRIE EQSKQLKMMF DQQQKTTTNL AETNHANNIC PNANSLSTTV EDPEILVLDG  360
SDDDVVMLSK ISQKKEGNFY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-19	187	250	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-19	187	250	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-19	187	250	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-19	187	250	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-19	187	250	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-19	187	250	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-19	187	250	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-19	187	250	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011075159.1	1e-131	myb family transcription factor PHL5 isoform X1
TrEMBL	A0A4D9BMU3	1e-144	A0A4D9BMU3_SALSN; Two-component response regulator ARR-B family
STRING	Migut.J01825.1.p	1e-111	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2491	24	58