PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100029390001

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

GATA

Protein Properties

Length: 486aa MW: 54102.6 Da PI: 6.6761

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100029390001	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	36.6	6.3e-12	9	36	8	35
GATA 8 kTplWRrgpdgnktLCnaCGlyyrkkgl 35 +TplWR+gp ++ LCnaCG ++r kg+ Ote100029390001\|100029390001 9 STPLWRNGPPEKPVLCNACGSRWRTKGT 36 6******88888*********997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00401	0.0027	4	50	IPR000679	Zinc finger, GATA-type
CDD	cd00202	2.36E-11	8	49	No hit	No description
Gene3D	G3DSA:3.30.50.10	2.5E-8	9	36	IPR013088	Zinc finger, NHR/GATA-type
Pfam	PF00320	1.2E-9	9	36	IPR000679	Zinc finger, GATA-type
SuperFamily	SSF57716	3.56E-6	9	40	No hit	No description
Pfam	PF13919	4.5E-8	275	352	IPR028020	ASX homology domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 486 aa Download sequence Send to blast
MMSTAFPPST PLWRNGPPEK PVLCNACGSR WRTKGTLANY TPLHARAEPD ELEFSRVKTA 60 PIKNKESMIL KRKLNSEIAE IGVDNNQFLH KVFDEDTSNR SSSGSAISNS EKYTQYGIAD 120 TSDFTSPPQP SAWDSVVPSR KRTCVARPKP SPVEVLTKDL YTLWYEQQSS CLSGSSEEDL 180 LLESDKPMVS VEIGHGSVLI RHPSSFIREE ESEASSLSVD KQYTLTSRRM SFQGFIEDTG 240 AYSSSKANEK IQNSVYPGAV PEQRKRQGPS CKITDSAHHN SPLCYIDLQD IVNFEMFSSH 300 LTTDEQQQLM KLLPSVDTSD APYSLRSMFG STEFNLNLSS FQKLIAEGVF DTSFGGVNAE 360 DCRILKQLVL YDLAKSKWVE RHTAFKDSKC KNSSKSEVVG DFKGFEIVTG GNLKRSRDGQ 420 HQKHTGSKLR MKSPRRNEFV SGESLFSIQN SVLDEELLLD VPSNASFPQA ELLLSSTSSS 480 SNLVRP

Sequence ? help Back to Top

Protein Sequence Length: 486 aa Download sequence Send to blast

MMSTAFPPST PLWRNGPPEK PVLCNACGSR WRTKGTLANY TPLHARAEPD ELEFSRVKTA  60
PIKNKESMIL KRKLNSEIAE IGVDNNQFLH KVFDEDTSNR SSSGSAISNS EKYTQYGIAD  120
TSDFTSPPQP SAWDSVVPSR KRTCVARPKP SPVEVLTKDL YTLWYEQQSS CLSGSSEEDL  180
LLESDKPMVS VEIGHGSVLI RHPSSFIREE ESEASSLSVD KQYTLTSRRM SFQGFIEDTG  240
AYSSSKANEK IQNSVYPGAV PEQRKRQGPS CKITDSAHHN SPLCYIDLQD IVNFEMFSSH  300
LTTDEQQQLM KLLPSVDTSD APYSLRSMFG STEFNLNLSS FQKLIAEGVF DTSFGGVNAE  360
DCRILKQLVL YDLAKSKWVE RHTAFKDSKC KNSSKSEVVG DFKGFEIVTG GNLKRSRDGQ  420
HQKHTGSKLR MKSPRRNEFV SGESLFSIQN SVLDEELLLD VPSNASFPQA ELLLSSTSSS  480
SNLVRP

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006359221.1	1e-172	PREDICTED: GATA transcription factor 26-like
Swissprot	Q8W4H1	1e-106	GAT26_ARATH; GATA transcription factor 26
TrEMBL	A0A4D9BM10	0.0	A0A4D9BM10_SALSN; Uncharacterized protein
STRING	PGSC0003DMT400067506	1e-171	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2089	24	62