PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100028870051
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family HD-ZIP
Protein Properties Length: 778aa    MW: 85541.8 Da    PI: 6.2411
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100028870051genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.32.7e-181270357
                                  --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                      Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                                  k  ++t+eq+e+Le+l++ +++ps  +r +L +++    +++ +q+kvWFqNrR +ek+
  Ote100028870051|100028870051 12 KYVRYTPEQVEALERLYHDCPKPSSMRRHQLIRECpilsNIEPKQIKVWFQNRRCREKQ 70
                                  5679*****************************************************97 PP
2START144.69.7e-461363122173
                                   HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEE CS
                         START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetl 82 
                                   +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s++++g a+ra+g+v  +++  v+e+l+d++ W ++++++e+l
  Ote100028870051|100028870051 136 IAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVGLEPT-RVAEILKDRPSWFRDCRAVEVL 215
                                   7899******************************************************.8888888888************ PP

                                   EEECTT..EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEE CS
                         START  83 evissg..galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepk 157
                                   + + ++  g+++l +++++a+++l+p Rdf+ +Ry+  + +g++v++++S++++q+ p+    +++vRae+lpSg+li+p+
  Ote100028870051|100028870051 216 NMLPTAngGTIELLYMQFYAPTTLAPgRDFWLLRYTSVMDDGSLVVCERSLSNTQNGPSvppVQNFVRAEMLPSGFLIRPC 296
                                   ****9999*************************************************9999899***************** PP

                                   CTCEEEEEEEE-EE-- CS
                         START 158 snghskvtwvehvdlk 173
                                   ++g+s +++v+h++l+
  Ote100028870051|100028870051 297 EGGGSIIHIVDHMNLE 312
                                   *************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.386771IPR001356Homeobox domain
SMARTSM003895.1E-15975IPR001356Homeobox domain
SuperFamilySSF466898.55E-171174IPR009057Homeodomain-like
CDDcd000863.57E-161272No hitNo description
PfamPF000467.3E-161370IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.8E-181470IPR009057Homeodomain-like
CDDcd146862.63E-664103No hitNo description
PROSITE profilePS5084823.035126312IPR002913START domain
CDDcd088759.81E-68130312No hitNo description
Gene3DG3DSA:3.30.530.201.4E-21134312IPR023393START-like domain
SMARTSM002346.6E-32135345IPR002913START domain
SuperFamilySSF559615.91E-35135319No hitNo description
PfamPF018522.7E-43136312IPR002913START domain
PfamPF086702.7E-47635777IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 778 aa     Download sequence    Send to blast
MAMESNGLDN GKYVRYTPEQ VEALERLYHD CPKPSSMRRH QLIRECPILS NIEPKQIKVW  60
FQNRRCREKQ RKEASRLQGV NRKLTAMNKL LMEENDRLQK QNALSTKDTS CESVVTSGQQ  120
HHSTPRDASP AGLLSIAEET LAEFLSKATG TAVEWVQMPG MKPGPDSIGI VAISHGCTGV  180
AARACGLVGL EPTRVAEILK DRPSWFRDCR AVEVLNMLPT ANGGTIELLY MQFYAPTTLA  240
PGRDFWLLRY TSVMDDGSLV VCERSLSNTQ NGPSVPPVQN FVRAEMLPSG FLIRPCEGGG  300
SIIHIVDHMN LEALRQLRQM AQDISQTNIS NWGRRPAALR ALSHRLSRGF NEALNGFSDE  360
GWTLLANDGM DDVTILVNSN PEKLMGLNIS FTNEYNSICN TILCAKASML LQNVPPAILL  420
RFLREHRSEW ADNVDTYAAS AAKIGPCTFL GTRVGNFGGQ VVLPLAQTIE HEEASISPED  480
AMMARDVFLL QLCSGMDENA VGTCAELIFA PIDASFAEDA PLLPSGFRII PLGSGKEASS  540
PNRTLDLASA LETGAASNKP SSDLAVANST TRSVMTIAFE FAFESHMQES VVSMARQYVR  600
SVISSVQRVA LALSSSHLGP HAGLRSPLGT PEAHTLARWI SQSYRSFMGV ELLRCSGEGS  660
ESILKALWHL SDAIMCCSMK AVPVFTFANQ AGLDMLETTL VALQDISLEK IFDDHGRKNL  720
FSEIPQIMHQ GFASLQGGIC LSSMSRPISY ERAVAWKVLN EDDNPHCFCF MFVNWSFV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of meristem development to promote lateral organ formation. May regulates procambial and vascular tissue formation or maintenance, and vascular development in inflorescence stems. {ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:15705957, ECO:0000269|PubMed:16617092}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269|PubMed:15773855, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:16617092, ECO:0000269|PubMed:17237362}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011072422.10.0LOW QUALITY PROTEIN: homeobox-leucine zipper protein ATHB-15
SwissprotQ9ZU110.0ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15
TrEMBLA0A1V0JHU30.0A0A1V0JHU3_SESIN; Homeobox-leucine zipper protein ATHB-15
STRINGMigut.D01005.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45724140
Publications ? help Back to Top
  1. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]