PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100025380051

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

HSF

Protein Properties

Length: 312aa MW: 35421.8 Da PI: 5.0464

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100025380051	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	98.4	6.8e-31	35	129	1	103
HHHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEE CS HSF_DNA-bind 1 aFlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweF 81 aFl+k+y+i++d++++++ sw + g+sf+++d+ +f+ ++Lp+yF+h+nfaSFv QLn YgF+k+ e++ we+ Ote100025380051\|100025380051 35 AFLTKTYQIVDDPATNSIASWGKYGDSFIIWDHIKFSAQILPNYFRHNNFASFVYQLNNYGFRKIGVEHQ--------WEY 107 69**************************************************************9994........* PP EESXXXXXXXXXXXXXXXXXXX CS HSF_DNA-bind 82 khksFkkgkkellekikrkkse 103 + +F+ +k +ll+++kr++++ Ote100025380051\|100025380051 108 GNTYFQMQKPHLLSNMKRRSEQ 129 *******************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46785	4.22E-28	31	126	IPR011991	Winged helix-turn-helix DNA-binding domain
Gene3D	G3DSA:1.10.10.10	7.8E-32	32	126	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	3.7E-43	32	126	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	1.5E-27	36	126	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	5.7E-17	36	59	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	5.7E-17	74	86	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	5.7E-17	87	99	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 312 aa Download sequence Send to blast
MKETNCTFSS SGITQEMGGV GDAGGIGRSR SSPPAFLTKT YQIVDDPATN SIASWGKYGD 60 SFIIWDHIKF SAQILPNYFR HNNFASFVYQ LNNYGFRKIG VEHQWEYGNT YFQMQKPHLL 120 SNMKRRSEQN ATPRRQRNSS FSPEMMKDAI DESKLEIEKL KMQQLDIDFH ITALEQEAKS 180 ISIATKKMVA SWAVACGIIA KRRREQFENK NSDDEAAGKR KKVVEVSDKN GGRDLLVDEM 240 VKELTTPLSE IEPMNSADDD EGKVKSEMCS NYLDFCKVIM LDDDDEEVFE VGGGDHSKQV 300 QISKDFQDLI MD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d8k_B	7e-21	34	126	3	105	Heat shock factor protein 2
5d8l_B	7e-21	34	126	3	105	Heat shock factor protein 2
5d8l_D	7e-21	34	126	3	105	Heat shock factor protein 2
5d8l_F	7e-21	34	126	3	105	Heat shock factor protein 2
5d8l_H	7e-21	34	126	3	105	Heat shock factor protein 2
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012830517.1	8e-51	PREDICTED: heat stress transcription factor A-7a-like
TrEMBL	A0A4D8Y8Q4	1e-74	A0A4D8Y8Q4_SALSN; Heat shock transcription factor, other eukaryote
TrEMBL	A0A4D9B3Y8	8e-75	A0A4D9B3Y8_SALSN; Heat shock transcription factor, other eukaryote
STRING	Migut.H01517.1.p	3e-50	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA16875	3	4