PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100025110161 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | NAC | ||||||||
Protein Properties | Length: 334aa MW: 37903.8 Da PI: 4.7617 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 81.8 | 1.4e-25 | 14 | 149 | 8 | 128 |
NAM 8 hPtdeelvveyLkkkvegkk......lelee..v.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra. 77 +P+d el+ e+L++k k ++ e +++ +i+ ++P++Lp +k++ ++++fF k ++y++g+rk+r Ote100025110161|100025110161 14 DPSDVELL-EHLAAKRGIGKsdshvfID--EfiPtLEDNeGICCTHPENLP-GAKKDGSSVHFFYKVTNAYSNGRRKRRRv 90 7*******.6777775544435554322..22222444346**********.556778899******************64 PP NAM 78 .......tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 ++++W++tgk+k++++ +g l+g kk++v+y +++ +k+ k++Wvmh+y+l Ote100025110161|100025110161 91 qdqdstmKSNARWHKTGKTKPIME-DGILKGFKKIMVLYgtSKTGSKPDKCNWVMHQYHL 149 777776544899************.9*************6644566777*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 25.466 | 7 | 168 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.3E-9 | 14 | 149 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 5.49E-28 | 14 | 168 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 334 aa Download sequence Send to blast |
MAWPSCWSXX XXXDPSDVEL LEHLAAKRGI GKSDSHVFID EFIPTLEDNE GICCTHPENL 60 PGAKKDGSSV HFFYKVTNAY SNGRRKRRRV QDQDSTMKSN ARWHKTGKTK PIMEDGILKG 120 FKKIMVLYGT SKTGSKPDKC NWVMHQYHLG TDEDEKEGEF VVSKITFQPE KATNTNENPT 180 IVKEEPDVKT VQVIPMTPNT TTPDPPRHDK TPYSDCLYED YFLDSFLKET EHIKRPSYSF 240 RLGDDEYATC LGANSEADNL SRGDYLRCNE IIESYAAFGG SSTQVNFDTG LQERDANASY 300 GICDLYNLEL DTAPDFQNLQ FDSQDSVFDS LERL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor regulating the transcriptional activation response to gamma irradiation (PubMed:19549833). Required for stem-cell death induced by UVB or by gamma irradiation (PubMed:20634150). Not required for ATM activation, but participates in pathways governed by both ATM and ATR sensor kinases (PubMed:19549833). Involved in DNA damage response (DDR) system that regulates cell cycle arrest (PubMed:24399300). Functional homolog of animal p53 (PubMed:24736489). Regulates SMR5 and SMR7 transcription (PubMed:24399300). Regulates DNA repair and cytokinin signaling separately and plays a key role in controlling lateral root formation under genotoxic stress. {ECO:0000269|PubMed:19549833, ECO:0000269|PubMed:20634150, ECO:0000269|PubMed:24399300, ECO:0000305|PubMed:24736489}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by zeocin or ionizing radiation treatment. {ECO:0000269|PubMed:23907539}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011097382.1 | 1e-141 | SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
Swissprot | Q6NQK2 | 2e-57 | NAC8_ARATH; SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
TrEMBL | A0A4D8ZFR3 | 1e-141 | A0A4D8ZFR3_SALSN; Uncharacterized protein | ||||
STRING | Solyc02g093420.2.1 | 1e-100 | (Solanum lycopersicum) | ||||
STRING | XP_009799111.1 | 1e-101 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8175 | 22 | 29 |