PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100023100011

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

WRKY

Protein Properties

Length: 302aa MW: 33854.7 Da PI: 4.7593

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100023100011	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	92.1	4.3e-29	140	198	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++prsYYrC+s+ gC ++k++e+s +dp +++itY+ eH h+ Ote100023100011\|100023100011 140 SDMWAWRKYGQKPIKGSPYPRSYYRCSSSkGCLARKQMEQSCTDPGMFIITYTAEHSHS 198 79***********************998**************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	8.4E-30	125	200	IPR003657	WRKY domain
PROSITE profile	PS50811	31.858	134	200	IPR003657	WRKY domain
SuperFamily	SSF118290	4.32E-25	135	200	IPR003657	WRKY domain
SMART	SM00774	1.7E-33	139	199	IPR003657	WRKY domain
Pfam	PF03106	6.5E-24	141	197	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 302 aa Download sequence Send to blast
MSESVADMED WSLQAIVRGS SGDLGKIVMD MDGPDLFHQL LDQDFTGFPD ILEGSSTGSS 60 DELEELYKPF YPSTTPFPLP DQAVLEFQEQ NVAEDKPSHD QSSITSPVAS AAAVYTPKYK 120 KRKNQHKRVV IQVSAEGLSS DMWAWRKYGQ KPIKGSPYPR SYYRCSSSKG CLARKQMEQS 180 CTDPGMFIIT YTAEHSHSQP TRRNSLAGTV RQKFPSPSGR PAKQEKSNFP EASQIAKMEA 240 VDAPPAIIKE EDAEEKPKEE NKEFMMSDFV FNEDFFSGLE EFDDFVSHAS AQQFPVRSCG 300 WV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	7e-18	141	201	18	80	Disease resistance protein RRS1
5w3x_D	7e-18	141	201	18	80	Disease resistance protein RRS1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012854209.1	1e-117	PREDICTED: probable WRKY transcription factor 29 isoform X1
TrEMBL	A0A0D5Y9B8	1e-138	A0A0D5Y9B8_SALMI; WRKY protein
STRING	Migut.A00718.1.p	1e-117	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5781	23	35