PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100018610111
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family TALE
Protein Properties Length: 456aa    MW: 51109.6 Da    PI: 6.8756
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100018610111genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.99.4e-103223591954
                                   HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                      Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                                   Fe   ++yp+ +e+  LA+++gLt +qV++WF N R +
  Ote100018610111|100018610111 322 FEHflHPYPKDSEKIMLARQTGLTRSQVSNWFINARVR 359
                                   554459******************************88 PP
2BELL124.54.2e-40179247169
                          BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaia 69 
                                   e+qelq+k +kLls+l+eVd+rY+qy++q+q+vissF+++ag g+akpYt+lAl++iSrhFrcL+dai 
  Ote100018610111|100018610111 179 EKQELQSKLTKLLSMLDEVDRRYRQYYHQMQIVISSFDVIAGSGAAKPYTALALQTISRHFRCLRDAIX 247
                                   689****************************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.7E-60116248IPR006563POX domain
PfamPF075265.9E-49122246IPR006563POX domain
PROSITE profilePS5007112.438300363IPR001356Homeobox domain
SMARTSM003893.6E-10303367IPR001356Homeobox domain
CDDcd000866.27E-13303364No hitNo description
SuperFamilySSF466898.13E-18304370IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.5E-29306369IPR009057Homeodomain-like
PfamPF059204.8E-18320359IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 456 aa     Download sequence    Send to blast
MLPSNTIMYM NFPSSSEPYS DAIPTNSHTT SIDIPPVPSD SNTSQQEVLL NFGGSRANEM  60
LMIHQAGGLS LSLXXXXXXX XXXXXXXXXX XXXXXXXXXX TSSVDGGGDV ASFGMQSAAR  120
CVPNSKYLRA AQDLLEEVVN VKKAMMKEQS SRKELKEVEK DGVSEPCAAT SKAEISAAEK  180
QELQSKLTKL LSMLDEVDRR YRQYYHQMQI VISSFDVIAG SGAAKPYTAL ALQTISRHFR  240
CLRDAIXXXX XXGQIQAARR SLGEEDASSS DKGVGISRLR YVDXXXXXXX XXXXXXXXXX  300
XAWRPQRGLP ESSVSVLRAW LFEHFLHPYP KDSEKIMLAR QTGLTRSQVS NWFINARVRL  360
WKPMVEEMYK EETGDADIDS NSSSETXXXX XXXXXXXAKA SELQPKSDEM NXXXXXXXXX  420
XXGIGRQLCI PHKGRDELCG REVDRSGLPY IGARKI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A5e-17309366158Homeobox protein Meis1
4xrs_B5e-17309366158Homeobox protein Meis1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011088451.11e-149BEL1-like homeodomain protein 7
SwissprotQ9SIW11e-116BLH7_ARATH; BEL1-like homeodomain protein 7
TrEMBLA0A4D9C6L41e-170A0A4D9C6L4_SALSN; Uncharacterized protein
STRINGMigut.B00204.1.p1e-143(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA102052226
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]