PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100015220082
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family HB-PHD
Protein Properties Length: 689aa    MW: 78569.3 Da    PI: 9.1972
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100015220082genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.82.1e-09472516953
                                   HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
                      Homeobox   9 keqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 
                                   ++ +e L  +F++n  p ++ r  L+k+lgL+ ++V  WF+N R+
  Ote100015220082|100015220082 472 HDAVEKLRLVFAENELPERAVRVSLSKQLGLEFEKVNKWFKNARY 516
                                   567899*************************************97 PP
2PHD35.62.1e-12204262251
                                   BTTTSS..TCTTSSEEEBS.SSSSEEETTTSTSSSSHHSHHSS......TBSSHHHHTT CS
                           PHD   2 CkvCgk..sdeegelvlCd.gCkewfHlkClglkleseekpeg......ewlCeeCkek 51 
                                   C+ C+   +  +++++lCd +C+++fH++C++++l +e+           w+C+ Ck+k
  Ote100015220082|100015220082 204 CAKCKLreAFPDNDIILCDgTCNRAFHQECMDPPLLTENTILPvppgdeGWFCKFCKKK 262
                                   88888854455********56*************998776655688899*******975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579039.3E-15195264IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.101.1E-12199262IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001610.407201262IPR019787Zinc finger, PHD-finger
CDDcd155047.27E-29203259No hitNo description
SMARTSM002491.0E-10203260IPR001965Zinc finger, PHD-type
PROSITE patternPS013590204259IPR019786Zinc finger, PHD-type, conserved site
PfamPF006281.6E-9204261IPR019787Zinc finger, PHD-finger
Gene3DG3DSA:1.10.10.605.0E-12453515IPR009057Homeodomain-like
SuperFamilySSF466891.88E-9459517IPR009057Homeodomain-like
PROSITE profilePS5007111.515461521IPR001356Homeobox domain
SMARTSM003895.2E-8463525IPR001356Homeobox domain
CDDcd000861.95E-7464524No hitNo description
PfamPF000468.9E-7472516IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 689 aa     Download sequence    Send to blast
MTVIALRSAQ FCRSSILYFF FEIKVCSSMS KNKRKVSGKG KENASLKRRK VVNKAVVCKT  60
RTSKKQPSSG GTKVKPTNVN SKENERKDDR DAVSHKLKRR TKKRKKNVEL DEASRLQRRT  120
RYLLIKVKLE QNLIDAYSTE GWKGQSREKI RPEKELQRAK KQILECKLGI REAIHQLDLL  180
SSEGRIIDSA VAADGSIHHE HIVCAKCKLR EAFPDNDIIL CDGTCNRAFH QECMDPPLLT  240
ENTILPVPPG DEGWFCKFCK KKIEILEATN AHLGTHFPLD SNWQDIFKEE ATLPDGENSV  300
LFQEEEWPSD DSADGDYDPD RIECSCSGYM SRSESDDSQY SSSFTGSLED EDGRFEEGIG  360
RYCDETLELI GVYSDEIHNS EVVSHPRQRA AVDYIKLYDE MFGKNATENE QISEDEDWGP  420
AKRKRKAKET NAASTLMTLG ETDRKTSVET LSDLKDEQLT KKMKRPIFRL PHDAVEKLRL  480
VFAENELPER AVRVSLSKQL GLEFEKVNKW FKNARYLALK ARKQTDKAEV GVNHGVQKES  540
ESENFKIGLG QISSRNNTGS LKAKISKRFL QRRNTHLLNH SFKIKQRRKS LLQPAGSNQM  600
TVDLGDDVSL KHLREKAKEA KKKLNCKSRG ETLEAETEME RLCQMKSRVE KMQQLLLELP  660
CSRFGKAGGN NSGDLSVLFV PVAELREKR
Functional Description ? help Back to Top
Source Description
UniProtSpecifically binds to the fungal elicitor-responsive DNA element, 5'-CTAATTGTTTA-3', of the gene PR2 promoter.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By pathogen infection.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020553239.10.0pathogenesis-related homeodomain protein isoform X2
SwissprotP487851e-147PRH_ARATH; Pathogenesis-related homeodomain protein
TrEMBLA0A4D8ZWU00.0A0A4D8ZWU0_SALSN; Uncharacterized protein
STRINGMigut.J00799.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA106842123
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]