PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100015220081
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family HB-PHD
Protein Properties Length: 716aa    MW: 81572.6 Da    PI: 9.3419
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100015220081genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.82.2e-09499543953
                                   HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
                      Homeobox   9 keqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 
                                   ++ +e L  +F++n  p ++ r  L+k+lgL+ ++V  WF+N R+
  Ote100015220081|100015220081 499 HDAVEKLRLVFAENELPERAVRVSLSKQLGLEFEKVNKWFKNARY 543
                                   567899*************************************97 PP
2PHD35.52.2e-12231289251
                                   BTTTSS..TCTTSSEEEBS.SSSSEEETTTSTSSSSHHSHHSS......TBSSHHHHTT CS
                           PHD   2 CkvCgk..sdeegelvlCd.gCkewfHlkClglkleseekpeg......ewlCeeCkek 51 
                                   C+ C+   +  +++++lCd +C+++fH++C++++l +e+           w+C+ Ck+k
  Ote100015220081|100015220081 231 CAKCKLreAFPDNDIILCDgTCNRAFHQECMDPPLLTENTILPvppgdeGWFCKFCKKK 289
                                   88888854455********56*************998776655688899*******975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579039.75E-15222291IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.101.1E-12226289IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001610.407228289IPR019787Zinc finger, PHD-finger
CDDcd155048.32E-29230286No hitNo description
SMARTSM002491.0E-10230287IPR001965Zinc finger, PHD-type
PfamPF006281.7E-9231288IPR019787Zinc finger, PHD-finger
PROSITE patternPS013590231286IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:1.10.10.605.2E-12480542IPR009057Homeodomain-like
SuperFamilySSF466891.97E-9486544IPR009057Homeodomain-like
PROSITE profilePS5007111.515488548IPR001356Homeobox domain
SMARTSM003895.2E-8490552IPR001356Homeobox domain
CDDcd000863.21E-7491551No hitNo description
PfamPF000469.3E-7499543IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 716 aa     Download sequence    Send to blast
MPGAAKEETR KKLHSEDDER TLESLKRELN QNKGHSSISK CKARELKPQI KVCSSMSKNK  60
RKVSGKGKEN ASLKRRKVVN KAVVCKTRTS KKQPSSGGTK VKPTNVNSKE NERKDDRDAV  120
SHKLKRRTKK RKKNVELDEA SRLQRRTRYL LIKVKLEQNL IDAYSTEGWK GQSREKIRPE  180
KELQRAKKQI LECKLGIREA IHQLDLLSSE GRIIDSAVAA DGSIHHEHIV CAKCKLREAF  240
PDNDIILCDG TCNRAFHQEC MDPPLLTENT ILPVPPGDEG WFCKFCKKKI EILEATNAHL  300
GTHFPLDSNW QDIFKEEATL PDGENSVLFQ EEEWPSDDSA DGDYDPDRIE CSCSGYMSRS  360
ESDDSQYSSS FTGSLEDEDG RFEEGIGRYC DETLELIGVY SDEIHNSEVV SHPRQRAAVD  420
YIKLYDEMFG KNATENEQIS EDEDWGPAKR KRKAKETNAA STLMTLGETD RKTSVETLSD  480
LKDEQLTKKM KRPIFRLPHD AVEKLRLVFA ENELPERAVR VSLSKQLGLE FEKVNKWFKN  540
ARYLALKARK QTDKAEVGVN HGVQKESESE NFKIGLGQIS SRNNTGSLKA KISKRFLQRR  600
NTHLLNHSFK IKQRRKSLLQ PAGSNQMTVD LGDDVSLKHL REKAKEAKKK LNCKSRGETL  660
EAETEMERLC QMKSRVEKMQ QLLLELPCSR FGKAGGNNSG DLSVLFVPVA ELREKR
Functional Description ? help Back to Top
Source Description
UniProtSpecifically binds to the fungal elicitor-responsive DNA element, 5'-CTAATTGTTTA-3', of the gene PR2 promoter.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By pathogen infection.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020553239.10.0pathogenesis-related homeodomain protein isoform X2
SwissprotP487851e-147PRH_ARATH; Pathogenesis-related homeodomain protein
TrEMBLA0A4D8ZWU00.0A0A4D8ZWU0_SALSN; Uncharacterized protein
STRINGMigut.J00799.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA106842123
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]