PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Ote100014550041 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 192aa MW: 21783.9 Da PI: 10.2274 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 61.1 | 1.7e-19 | 64 | 118 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++t++q++ Le+ F ++ ++++++++ LA+kl+L+ rqV vWFqNrRa+ k Ote100014550041|100014550041 64 RKKLKLTRDQTTLLEDSFTQHTTLNTAQKQALAEKLNLKPRQVEVWFQNRRARTK 118 678899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 115.4 | 3.5e-37 | 64 | 154 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLe 81 +kk++l+++q +lLE+sF+++++L++ +K++la++L+l+prqv+vWFqnrRARtk+kq+E+++++Lk+++++l+een+rL+ Ote100014550041|100014550041 64 RKKLKLTRDQTTLLEDSFTQHTTLNTAQKQALAEKLNLKPRQVEVWFQNRRARTKLKQTEVECAMLKKNCERLSEENRRLK 144 69******************************************************************************* PP HD-ZIP_I/II 82 keveeLreel 91 kev eLr+++ Ote100014550041|100014550041 145 KEVLELRSSM 154 *******887 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 4.18E-18 | 49 | 121 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.552 | 60 | 120 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.7E-14 | 62 | 124 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.76E-13 | 64 | 121 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.1E-17 | 64 | 123 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 1.0E-16 | 64 | 118 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 95 | 118 | IPR017970 | Homeobox, conserved site |
SMART | SM00340 | 6.0E-12 | 120 | 164 | IPR003106 | Leucine zipper, homeobox-associated |
Pfam | PF02183 | 8.2E-9 | 120 | 153 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 192 aa Download sequence Send to blast |
MDGNGEVCLG LGLGLPEFSQ KREVPQNKNK RLLFLDLSIP VQQNDHDKQT SFSQDINFSM 60 NFGRKKLKLT RDQTTLLEDS FTQHTTLNTA QKQALAEKLN LKPRQVEVWF QNRRARTKLK 120 QTEVECAMLK KNCERLSEEN RRLKKEVLEL RSSMEIEKPA AFFHHDHKGA AAAGRGGGGK 180 PAAAVLEVVH HP |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012837577.1 | 2e-63 | PREDICTED: homeobox-leucine zipper protein HOX17-like | ||||
TrEMBL | A0A4D9BMB1 | 3e-70 | A0A4D9BMB1_SALSN; Homeobox-leucine zipper protein | ||||
STRING | Migut.J01509.1.p | 2e-52 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA16139 | 4 | 5 |