PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100009510131
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family C3H
Protein Properties Length: 706aa    MW: 78567.6 Da    PI: 7.6513
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100009510131genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH291.8e-09127150327
                                   S---SGGGGTS--TTTTT-SS-SSS CS
                       zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                                   telC++fa+ G C++G++Ck+ H++
  Ote100009510131|100009510131 127 TELCSDFAA-GRCRRGGQCKYLHPK 150
                                   89*******.*************96 PP
2zf-CCCH192.6e-06210231426
                                   ---SGGGGTS--TTTTT-SS-SS CS
                       zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                                   ++C++f + G C+ Gd+C+F+H 
  Ote100009510131|100009510131 210 VPCKNFVK-GKCRWGDTCRFSHH 231
                                   69******.*************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003564.5E-6124150IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.79E-5124149IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.934124151IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-5127149IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-6127150IPR000571Zinc finger, CCCH-type
SMARTSM003560.0049206232IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.094206233IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-5207231IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-4211231IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.375253279IPR000571Zinc finger, CCCH-type
SMARTSM003560.0012254278IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 706 aa     Download sequence    Send to blast
MGERRKRKSL WDKEAETKPF PGTSDNNTWT GKDQHTSQDS EHYHENPASG SHVASKFRDH  60
SGQPSLELIE KDPVAQMNGG FNRTRENAPE EKEIGGENSY NQNMPSNIKY DQDRTHSRRR  120
SQPEKLTELC SDFAAGRCRR GGQCKYLHPK DTSHRDGGAD TSESWRRRAD HGNDSKQSYG  180
RVPWTELKGD LSESYHAEDE QFQNKSKNAV PCKNFVKGKC RWGDTCRFSH HFASVEGTKH  240
LSSDKDTELQ PNRSRKQICK YFAAGKCDRD DCRFSHEDSK FNSLEAGHGK VINDRGSRDK  300
VNRRNDSTWG DPGSTVDNSN AGNDNKEHAS RAGSGSYGGD FGTTESVSKV LQNQDRNLNV  360
QGQNNFLVDQ KLFANFTGQV LVPGQNMHQN CESIPPRNSY NSEQTPAKIG AEIPLVTNVN  420
LQSLIQKHQN AIQMSDASQS NLVISEHSAQ YTSAPPSVAP HQVAPMANPV MYPDKLFENE  480
HSGKDAAPEV CSSMVTLVSI SNAPSNLPVD STANIKSNPV GVSNDPLNPM ENGGSNNEHG  540
KHTAKGNKIL SPSSTVGMVS NNSEVDHSGR PKLQQEAAPE NRELDEVKRG SCEQSKGVEN  600
SMQTLDGHGK GEEIIANKDD KEMRLFKNSL IEFVKDILKP TWKEGRMSRE VHKTIVKKVV  660
DKILSTIQTD HIPKTQEKVE QYLSFSKLKI AKLVQAYVDR CLKPDS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A4D9C2400.0A0A4D9C240_SALSN; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52552029