PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100006840031
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family WRKY
Protein Properties Length: 581aa    MW: 62700.3 Da    PI: 5.6081
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100006840031genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.97.8e-32298355260
                                   --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                          WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                                   +DgynWrKYGqK+vkgse+prsYY+Ct+++Cpvkkkvers+ +++++ei+Y+g H h+k
  Ote100006840031|100006840031 298 EDGYNWRKYGQKHVKGSEYPRSYYKCTHPNCPVKKKVERSQ-EGHITEIIYKGAHIHPK 355
                                   8****************************************.***************85 PP
2WRKY104.65.4e-33500558159
                                   ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                          WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                   ldDgy+WrKYGqK+vkg+++prsYY+CtsagC+v+k+ver+++d k v++tYeg+Hnh+
  Ote100006840031|100006840031 500 LDDGYRWRKYGQKVVKGNPNPRSYYKCTSAGCNVRKHVERASHDLKSVITTYEGKHNHD 558
                                   59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081122.687292356IPR003657WRKY domain
Gene3DG3DSA:2.20.25.807.9E-28295356IPR003657WRKY domain
SuperFamilySSF1182905.49E-25296356IPR003657WRKY domain
SMARTSM007743.1E-35297355IPR003657WRKY domain
PfamPF031062.4E-24298354IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.4E-37485560IPR003657WRKY domain
SuperFamilySSF1182901.07E-28492560IPR003657WRKY domain
PROSITE profilePS5081138.733495560IPR003657WRKY domain
SMARTSM007746.6E-38500559IPR003657WRKY domain
PfamPF031063.7E-25501558IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0009942Biological Processlongitudinal axis specification
GO:0030010Biological Processestablishment of cell polarity
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 581 aa     Download sequence    Send to blast
MSGFDDHVAI MGDWMPPSPN PGAFFLSMMN DDVAARPNVE SDSGSKSVPH LVGSEQEGAL  60
RNADQKDQSE ANFGDNESSS SGAFDGPKMG SRGGLMERIA ARAGFNAPRL NTESIRPADL  120
SKKPEVRSPY LTIPPGLSPT TLLDSPVFLS NSLVLPSPTT GKFSFAPSGD YRDSTLIACD  180
SDKGKENSFE DMNASSFAFK PITESASFPY FAAANKSFPS AGFTVYPNAS LPRQSIEPNK  240
TQSFQEASFS KPDLGDNGSN HLLQQTHNSD HSSPFDEPND DGDQRSSGDP NSGGSTAEDG  300
YNWRKYGQKH VKGSEYPRSY YKCTHPNCPV KKKVERSQEG HITEIIYKGA HIHPKPPPSR  360
RSTLGNQFDS DQPATGDPIW LAVQNGNVAG GSKSDNLEAT SSGLPGQDYR NGGGNALQAQ  420
NGAQFESGDG VDGSCTFSND EDEEDRGTHG SVSLGYDAEG DESESKRRRI EAYAPEMSGA  480
ARPIREPRVV VQTTSEVDIL DDGYRWRKYG QKVVKGNPNP RSYYKCTSAG CNVRKHVERA  540
SHDLKSVITT YEGKHNHDVP AARNSGAHMN SGGQNALPPQ Q
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-37298561878Probable WRKY transcription factor 4
2lex_A6e-37298561878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Regulates WOX8 and WOX9 expression and basal cell division patterns during early embryogenesis. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Required to repolarize the zygote from a transient symmetric state. {ECO:0000269|PubMed:21316593}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00071PBMTransfer from AT5G56270Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011095658.10.0probable WRKY transcription factor 2
SwissprotQ9FG771e-176WRKY2_ARATH; Probable WRKY transcription factor 2
TrEMBLA0A0D5YAF40.0A0A0D5YAF4_SALMI; WRKY protein
STRINGVIT_19s0015g01870.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37112341
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Ueda M, et al.
    Transcriptional integration of paternal and maternal factors in the Arabidopsis zygote.
    Genes Dev., 2017. 31(6): p. 617-627
    [PMID:28404632]
  4. Lei R, et al.
    Arabidopsis WRKY2 and WRKY34 transcription factors interact with VQ20 protein to modulate pollen development and function.
    Plant J., 2017. 91(6): p. 962-976
    [PMID:28635025]