PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100003620041
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family C2H2
Protein Properties Length: 176aa    MW: 20151.3 Da    PI: 10.3097
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100003620041genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.88.4e-057799123
                                  EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                  ++C++C k+F ++  L  H++ H
  Ote100003620041|100003620041 77 FECQYCLKVFANSQALGGHQNAH 99
                                  89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.28E-673104No hitNo description
Gene3DG3DSA:3.30.160.602.5E-573103IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.26177104IPR007087Zinc finger, C2H2
PfamPF139122.1E-677101IPR007087Zinc finger, C2H2
PROSITE patternPS0002807999IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009736Biological Processcytokinin-activated signaling pathway
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010090Biological Processtrichome morphogenesis
GO:0005634Cellular Componentnucleus
GO:0022626Cellular Componentcytosolic ribosome
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
METTSLSSSQ EKSIFLSSSQ EKSISHKKLK LFGVELEQDN NNKGWTLDRD ESVNSSASST  60
VTEKPASTTG EAEDKKFECQ YCLKVFANSQ ALGGHQNAHK KERLRKKRLQ LQARKATINS  120
CYIQPFYYNN NHHHNNKHSL NYXXXXXXXX XHGSMIIMNS RSSRIHNRRS VLGRPI
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor required for the initiation of inflorescence trichomes in response to gibberellin and cytokinin. Acts upstream of GIS, GIS2, ZFP8, and the trichome initiation factors GL1 and GL3. Binds the promoter region of GIS and GIS2, which may be direct targets of GIS3. {ECO:0000269|PubMed:25640859}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011087078.12e-54zinc finger protein 5
SwissprotQ9C9H13e-14GIS3_ARATH; Zinc finger protein GIS3
TrEMBLA0A2G9HUT83e-53A0A2G9HUT8_9LAMI; Uncharacterized protein
STRINGEOY003282e-36(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51362130
Publications ? help Back to Top
  1. Sun L, et al.
    GLABROUS INFLORESCENCE STEMS3 (GIS3) regulates trichome initiation and development in Arabidopsis.
    New Phytol., 2015. 206(1): p. 220-30
    [PMID:25640859]