PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100002990051
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family MYB
Protein Properties Length: 558aa    MW: 62347.4 Da    PI: 9.4947
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100002990051genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.23.3e-174588448
                                  S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding  4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                  WT eEd++l ++vk++  ++W +I+++m+ gRt+ qc +rwqk+l
  Ote100002990051|100002990051 45 WTDEEDKQLTKVVKRFNAKNWQKISECMP-GRTDVQCLHRWQKVL 88
                                  *****************************.************986 PP
2Myb_DNA-binding56.37.6e-1894140148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                   + +WT+eEd++ +++v+++G++ W+ Ia+ +  gR +kqc++rw+++l
  Ote100002990051|100002990051  94 KSPWTKEEDDRVIELVEKYGNKKWSFIANFLH-GRNGKQCRERWHNHL 140
                                   679*****************************.*************97 PP
3Myb_DNA-binding50.64.5e-16146188145
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                                   +++WT+eE+  l +++++lG++ W+ Ia+ ++ gRt++ +k++w+
  Ote100002990051|100002990051 146 KDAWTKEEEATLRHYHQLLGNK-WAEIAKFLP-GRTDNAIKNYWN 188
                                   679*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.7933588IPR017930Myb domain
SuperFamilySSF466893.01E-1941102IPR009057Homeodomain-like
SMARTSM007177.0E-154190IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.9E-214499IPR009057Homeodomain-like
CDDcd001676.89E-144588No hitNo description
PfamPF002494.1E-154588IPR001005SANT/Myb domain
PROSITE profilePS5129429.80789144IPR017930Myb domain
SuperFamilySSF466895.24E-3291187IPR009057Homeodomain-like
SMARTSM007171.9E-1693142IPR001005SANT/Myb domain
CDDcd001674.81E-1596140No hitNo description
PfamPF139211.2E-1897157No hitNo description
Gene3DG3DSA:1.10.10.601.3E-25100146IPR009057Homeodomain-like
PROSITE profilePS5129418.234145195IPR017930Myb domain
SMARTSM007171.2E-15145193IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.5E-22147193IPR009057Homeodomain-like
CDDcd001671.07E-11148188No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 558 aa     Download sequence    Send to blast
MSSYSSFSDS SSGAVTPRSS FDSGLSIRRC SRPFGPTKRS SQAGWTDEED KQLTKVVKRF  60
NAKNWQKISE CMPGRTDVQC LHRWQKVLNP DLIKSPWTKE EDDRVIELVE KYGNKKWSFI  120
ANFLHGRNGK QCRERWHNHL DPAIKKDAWT KEEEATLRHY HQLLGNKWAE IAKFLPGRTD  180
NAIKNYWNCS VKKRPDLNLP SISAMELRGC SYLKVFNNDA KLQAESGATS PYSDQEKVFE  240
NSDGACSTIM ALGNSNFSAD HAHTQKASMS TSRPKEVSID SIQFGWPPTN IRRSSFSGSS  300
NNIRSRNLSS SSLNYVGADD LGNVPENARM LTSPKRARDS QCITNDRCNS PVDTVLSLSL  360
SEYTNEGQKT GKRSRVXXXX XXXXXXXXXX XXXXXXQNDS YAPISSGCST SIEQASRQIV  420
NSNLSHLSLS ISSNVDSPEF ILKRSSMSYR NTPSIIRNKA FRAATSGSYS SSSSIPRHIL  480
SCTSNSEYDD RSNLFSESGF SHSRDSRSGL SVIGQAVGRR LEYAFDLEWD STSVRCQTPG  540
SAAVSSELKV EKKISLTP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C3e-65451949158MYB PROTO-ONCOGENE PROTEIN
1h89_C3e-65451949158MYB PROTO-ONCOGENE PROTEIN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020550693.10.0uncharacterized protein LOC105164125
TrEMBLA0A4D9BA830.0A0A4D9BA83_SALSN; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA103932025