PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100001960031
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family C3H
Protein Properties Length: 707aa    MW: 77418.9 Da    PI: 6.4683
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100001960031genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.32.3e-07281301526
                                   --SGGGGTS--TTTTT-SS-SS CS
                       zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                                   +C++f++ G C++Gd C +aHg
  Ote100001960031|100001960031 281 PCPDFRK-GACRRGDMCEYAHG 301
                                   8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.205.1E-1715154IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484033.11E-1817152IPR020683Ankyrin repeat-containing domain
PfamPF127967.0E-1055128IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029716.97159166IPR020683Ankyrin repeat-containing domain
SMARTSM002480.425989IPR002110Ankyrin repeat
CDDcd002042.56E-1462149No hitNo description
PROSITE profilePS5008811.94294129IPR002110Ankyrin repeat
SMARTSM002482.0E-494126IPR002110Ankyrin repeat
SMARTSM003564.0E-6276302IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.4E-4280303IPR000571Zinc finger, CCCH-type
PfamPF006426.2E-5281301IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.582281303IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-4309339IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.193311335IPR000571Zinc finger, CCCH-type
SMARTSM0035620311334IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 707 aa     Download sequence    Send to blast
MSVSFLKVEI EDTSASLLEL ASNNDIEGFK KYIDREPSSV DVVGLWYGRQ NGSSQMVLQH  60
LTPLMVSATY GSIDVLKLLV SLPEVDVNRN CGVDNCTALH CAASGGSVNA IDAVKLLLAA  120
GADPNLTDAN GRRPFDVIVV SPRLQAVKYS LQMMLTMGST FEEEHHLRVS IGASNLDSPP  180
LSPSHANGSP HSPELAPSME DIKSNGHPAL SAAEKKEYPG DPTLPDIKNS IYSTDEFRMF  240
SFKVRPCSRA YSHDWTECPF VHPGENARRR DPRKYHYSCV PCPDFRKGAC RRGDMCEYAH  300
GVFECWLHPA QYRTRLCKDG TNCNRRVCFF AHTQEELRPL YVSTGSAVPS PRSNAAAANA  360
MDFAAAMSLL PGSPSSVHVM PPSPFTPPMS PSANGISNPG WPSQQNVPAL HLPGSNFQSS  420
RLRSSFNARD IPLEDLNVFG DVDIQQQQLL NELPFLSQAS INTNMLNRSV RPKTLTPSNL  480
EDIFSEESSS PIYSDQSLAS AVFSPRHKSV VPNQFQQQPQ SMLSPIKTTF SPRNVDHSLL  540
QSPFRVPSSG RMSPHAVEPI SPMSARVSML ARQEKQHQQY RSLSSRDLGS SAAAAVASLE  600
ENRSKWGSPN GQPEWAVTGD DFGKLKRSSS FELLNNGEEP DLSWVHSLVK ESPQDIKEKY  660
APCVSGATGT ATSSGEGANM TNKMEQVDQS VLGAWLDQMH LDQLMAQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011078886.10.0zinc finger CCCH domain-containing protein 30-like
RefseqXP_020549443.10.0zinc finger CCCH domain-containing protein 30-like
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLA0A4D9B8Z00.0A0A4D9B8Z0_SALSN; Uncharacterized protein
STRINGEMJ058250.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8832488
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. He L, et al.
    Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene.
    Plant Physiol., 2016. 171(3): p. 1675-85
    [PMID:27208260]