PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_28215A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family bHLH
Protein Properties Length: 349aa    MW: 37032 Da    PI: 7.5738
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_28215AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH19.51.8e-06241281954
                                HHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                        HLH   9 ErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                                 r RR+ri +++  L++l+P  +      +++ a++L +A  Y++ L
  Oropetium_20150105_28215A 241 ARLRRERISERLRALQRLVPGgC------RMDTASMLDEAASYLRFL 281
                                599******************77......9**************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.05E-10225286No hitNo description
PROSITE profilePS5088814.043232281IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.3E-11238287IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.01E-12238292IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.5E-9238289IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MDFFGWSTQS YAAEPCLPSR PSDDDDNGLL SAVLCTSLHN GLYTDHSSLA AMSSSSQTIP  60
ILVQGHDGTS DLPDSGTPAG TLPNVMTNGA VEDDDLFDAF AYVVPNFAEG SAQAAASNLS  120
GYGSSSTTGG GNGNISSGRR RQPWCGSSWV DVLIDQPRHV RGQQIHSHHH HQTSSSGGMT  180
LLGRSGYQPA DAEAIARAKE SIYRAAAMRP VHQLVISYQN TVKPRRRKNV RISSDPQTVA  240
ARLRRERISE RLRALQRLVP GGCRMDTASM LDEAASYLRF LKSQIKALES WGGYCNGGGG  300
GSLLQNYCTG NRPGHCGGGG SINAVLAFGS RDDGIVGGYT QNLARELT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1223227PRRRK
2241246RLRRER
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_28215A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0658893e-71BT065889.1 Zea mays full-length cDNA clone ZM_BFc0179C07 mRNA, complete cds.
GenBankBT0663023e-71BT066302.1 Zea mays full-length cDNA clone ZM_BFc0192A04 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004961359.12e-58transcription factor BHLH089
TrEMBLK3Z6V55e-57K3Z6V5_SETIT; Uncharacterized protein
STRINGSi022274m9e-58(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP154637106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21330.13e-26bHLH family protein