PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_27990A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family NAC
Protein Properties Length: 290aa    MW: 32267.3 Da    PI: 8.0259
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_27990AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM64.43.4e-202213817128
                        NAM  17 eyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk... 95 
                                 yL++kv+gk+l++ e+ike+diyk++PwdLp+  +++ + + +    ++ ++ ++++ +++  +    +   +  +++s+   
  Oropetium_20150105_27990A  22 SYLRRKVAGKRLSI-EIIKEFDIYKHDPWDLPSegQHDFHGQGMVLLLPAGEEIPEQHPAQQGHRLRLLEGHRHRPPIYSAaag 104
                                5*************.89***************5234444677888999999888876654444443344445555566665555 PP

                        NAM  96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128
                                  g  +glkk+Lvfy+g+a kg+kt+W+mhe+rl
  Oropetium_20150105_27990A 105 rAGDSIGLKKSLVFYRGSAGKGTKTEWMMHEFRL 138
                                48888***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100517.311154IPR003441NAC domain
SuperFamilySSF1019416.93E-1822143IPR003441NAC domain
PfamPF023654.5E-623138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MAPDYNLMMN KEPWIPRASS PSYLRRKVAG KRLSIEIIKE FDIYKHDPWD LPSEGQHDFH  60
GQGMVLLLPA GEEIPEQHPA QQGHRLRLLE GHRHRPPIYS AAAGRAGDSI GLKKSLVFYR  120
GSAGKGTKTE WMMHEFRLPP RPKAPARLRA LKKRRNMTYK KQQPTAGAGN VVAAAAAAAQ  180
PDSCSNTGSL ESDWRRQAPM NNNVSDDVYN SHCYQFDQGQ WNNAAVAQSE APQHSPEMAS  240
ALHHGGVYSS PAVPDYDLYY KDGCSWDDIG SMVMELTDPS VFYDCTLFA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-152313832140Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_27990A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004955426.12e-78transcription factor JUNGBRUNNEN 1
TrEMBLA0A368PUM34e-77A0A368PUM3_SETIT; Uncharacterized protein
TrEMBLK3ZV463e-77K3ZV46_SETIT; Uncharacterized protein
STRINGSi030477m6e-78(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP119138129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43000.16e-22NAC domain containing protein 42