PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_27568A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family bHLH
Protein Properties Length: 892aa    MW: 97254.6 Da    PI: 6.835
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_27568AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.40.000296967331355
                                HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                        HLH  13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                                R+ i +++ eLrel+P+ a      K s  + Lek+++++  Lq
  Oropetium_20150105_27568A 696 RQLIQDRIKELRELVPNgA------KCSIDSLLEKTIKHMLFLQ 733
                                67799************77......777778*********9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.2E-296154IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088811.115683732IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.3E-4696740IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.67E-5696738IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010078Biological Processmaintenance of root meristem identity
GO:0010089Biological Processxylem development
GO:0010479Biological Processstele development
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 892 aa     Download sequence    Send to blast
MAVGDALRRL CEEVGWSYAV FWKAIGAADP VHLVWEDGYC GHASCSVGSE ASEVGCEQGT  60
SVCTLVRKVM ASQVHVVGEG TIGRAAVTGN HQWIVHGAAN DHKLRSEVAA EMNHQFVAGI  120
RTIAIVPVLP RGVLQLGSTS VVMENTDFVL QYKKLCSQLN NRSSIASSAS VKNDINQKVQ  180
SRPLNAPSSN YTADSCSKFF SGSSMSYEQC YGPDATALSS STLANTGRNA SMLMVAQRNG  240
QAVKEHILYT PDLRFRQQPI YCDTRVESNI QRSVVSSGLI SSVSAAMEKH PLLKTTSGQL  300
EQGSLEDMSE PRNVLLKSLA CRDPVIHENV NSTLLHSRGQ ALDFLNGGGN FDFLPGSSRV  360
VKGNLYASAA NQMFGQRCTS TSAMAGYKPA ISYKIPQSAQ FVMKMESPKR ETFQGSATPS  420
GSDTKVSIGL KTAISQENQH NVSDFVCQKK VNEVNDPADV IFQVVKNMDR RKLHDTSDER  480
SSSLLVDPTT ENDLFDMFST EFHQLYSSVD NDLNWKAAKP ESSTRNIPEP SAHLDTSSAF  540
DSVGDEFPYS AIFSLTDSDQ LLDAVISNVN PSGKQISGDS ASCKTSLTDI PSSSYSHSKE  600
TKHCESRGAP PLLVKNELSV SNFVKQPSFP EKADDGCLSQ NNGMQKSQIR LWIESGQNMK  660
CESVSASNSK GVDTSSKASR KRSRPGENPK PRPKDRQLIQ DRIKELRELV PNGAKCSIDS  720
LLEKTIKHML FLQSVTKHAD NLKDSNESKI LGGDNGPLKD CFEGGATWAF DVGSQSMTCP  780
IIVEDLERPR QMLVEMLCED RGIFLEIADF IKGLGLTILR GVMEARKNKI WARFTVEANR  840
DVTRMEIFLS LMRLLEPSCD GRAGENPNNV KIPLGAAQYP VIPVTGHLSD S*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_27568A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025808394.10.0transcription factor LHW-like
TrEMBLA0A1E5WGB50.0A0A1E5WGB5_9POAL; Transcription factor LHW
STRINGSb08g003770.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26543242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31280.17e-51conserved peptide upstream open reading frame 7