 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Oropetium_20150105_27539A |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
|
| Family |
TCP |
| Protein Properties |
Length: 250aa MW: 26508.2 Da PI: 10.256 |
| Description |
TCP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Oropetium_20150105_27539A | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | TCP | 62.6 | 1.5e-19 | 47 | 90 | 3 | 46 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsk 46
g+kdrhsk+ T +g+RdRRvRls+++a++++dLqd+LG+ ++sk
Oropetium_20150105_27539A 47 GGKDRHSKVRTVKGLRDRRVRLSVPTAIQLYDLQDRLGLSQPSK 90
78*****************************************8 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 250 aa
Download sequence Send
to blast |
MISGNHTNEE LARCRKAEQQ PGAAVASSRH WPPSTESRIV RVSRVFGGKD RHSKVRTVKG 60
LRDRRVRLSV PTAIQLYDLQ DRLGLSQPSK FPPTHAQDLV XXXXXXXXXX FASAASAAVL 120
DGDKSVGGSI KGLMGLNNSV NGLVNGGAMP LAHGLFFAGG ESWTSGGGSV HDQVSHGNSP 180
QQPTVAHHSP FSSLLSLAPR PQLVFYSPEG GAFAMKEAPD QFPVDNLEHS QGLLSLSSAR 240
SFLHSGSQG*
|
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | EU968908 | 9e-80 | EU968908.1 Zea mays clone 324906 TCP family transcription factor containing protein mRNA, complete cds. |
