 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Oropetium_20150105_26960A |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
|
| Family |
TCP |
| Protein Properties |
Length: 452aa MW: 47118.1 Da PI: 8.3379 |
| Description |
TCP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Oropetium_20150105_26960A | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | TCP | 107.6 | 1.9e-33 | 62 | 189 | 2 | 111 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.................... 65
g+kdrhsk++T++g RdRRvRls+ +a++f+dLqd+LG+d++sk+ieWL+++a ai++l+++
Oropetium_20150105_26960A 62 SGGKDRHSKVYTAKGIRDRRVRLSVATAIQFYDLQDRLGYDQPSKAIEWLIKAAADAIDKLPSLevaaagfpshpasaaaaaga 145
689*************************************************************87777665555444444444 PP
TCP 66 ......ssssaseceaesssssasnsssg.............kaaksaakskksqksaasalnla 111
+ +++ + +s+ s++s+ s+l+l+
Oropetium_20150105_26960A 146 gankgtA---------------------TpppaedadddedqGNQQRSGCSSTSETSKGSVLSLS 189
4433321.....................0222222222222212222223333333333333333 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0009637 | Biological Process | response to blue light |
| GO:0009965 | Biological Process | leaf morphogenesis |
| GO:0030154 | Biological Process | cell differentiation |
| GO:0045962 | Biological Process | positive regulation of development, heterochronic |
| GO:1903508 | Biological Process | positive regulation of nucleic acid-templated transcription |
| GO:2000306 | Biological Process | positive regulation of photomorphogenesis |
| Sequence ? help Back to Top |
| Protein Sequence Length: 452 aa
Download sequence Send
to blast |
MESCGGGGGV VEGRKRGRVK SAGEEPEAKR RMPAATLAPW AAAAQPQPQH PASRIYRVSR 60
ASGGKDRHSK VYTAKGIRDR RVRLSVATAI QFYDLQDRLG YDQPSKAIEW LIKAAADAID 120
KLPSLEVAAA GFPSHPASAA AAAGAGANKG TATPPPAEDA DDDEDQGNQQ RSGCSSTSET 180
SKGSVLSLSR SEXXXXXXXX XXXXXAAARD KDPADDRRAP PAATTSSFTE LLTGMATAAA 240
TAAAPSPVVA EHKQQQQSSI SWTPMAVSAT TADYIGFAQP RKAGHAMAHS HLASPAPHLG 300
SSIGVTPAQQ HFGLPAGAVT VASGGGEPPH AEMTQFSFLQ DHFMPVHAAP PPASGAAGEY 360
NLNFSMSSGL VGVNGRGTLQ SNSHISGHHH HQHHHHQQQL QRLSAPLDAP NIPFLFSPAA 420
AAAPTAADTQ FAAFQLWNGI HHADIKEKGK N*
|
| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 13 | 30 | RKRGRVKSAGEEPEAKRR |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | BT066930 | 3e-87 | BT066930.1 Zea mays full-length cDNA clone ZM_BFb0110J16 mRNA, complete cds. |
| Best hit in Arabidopsis thaliana ? help
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| Hit ID |
E-value |
Description |
| AT4G18390.2 | 1e-37 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2 |
