PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_26524A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

bHLH

Protein Properties

Length: 147aa MW: 16006.5 Da PI: 12.0741

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_26524A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	13.7	0.00011	112	137	2	27
HHHHHHHHHHHHHHHHHHHHHHHCTS CS HLH 2 rrahnerErrRRdriNsafeeLrell 27 + + erE+ Rd++N+ f eL ++l Oropetium_20150105_26524A 112 KNHKAEREKLKRDQLNDLFLELSSML 137 677899*****************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	5.52E-5	101	140	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 147 aa Download sequence Send to blast
MRQRRKARVQ GTEVGPTATG HVSPRCRPSV RVVVATRSLR VLASLSLSSP SALALLPPLP 60 PPQQPSRLLP SPHARHPLAS QSSDGVGSGQ SRSAGAVVRH SDQRSQEKTP KKNHKAEREK 120 LKRDQLNDLF LELSSMLVVH YTLMFL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_26524A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP22282	4	4

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_26524A