 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Oropetium_20150105_26325A |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
|
| Family |
Trihelix |
| Protein Properties |
Length: 305aa MW: 34746.2 Da PI: 10.136 |
| Description |
Trihelix family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Oropetium_20150105_26325A | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | trihelix | 35.3 | 3.1e-11 | 74 | 165 | 1 | 85 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegek...krtsesss 77
+Wt+ + aL++a ++ r++r+ ++ W ev++ + + s qC+++++ l+k++kk+ke+++ +r+ +++s
Oropetium_20150105_26325A 74 EWTEGSTFALLDAWGDRFVRSGRRGIRAEEWLEVADLAsaadGRPEGHFSESQCRNRIDTLRKKFKKEKERMRmaaRRSRPTTS 157
5**********************************99987775555578999*****************987622255788899 PP
trihelix 78 tcpyfdql 85
+++yfd++
Oropetium_20150105_26325A 158 KWVYFDKM 165
*******9 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 305 aa
Download sequence Send
to blast |
MGDDAXXXXX XXXXXXXXXX XXXRSPSSPH TKRRRTDRYA LGFEFAPRLA PYEVPSSPER 60
IPSPEAPPPR ASPEWTEGST FALLDAWGDR FVRSGRRGIR AEEWLEVADL ASAADGRPEG 120
HFSESQCRNR IDTLRKKFKK EKERMRMAAR RSRPTTSKWV YFDKMMSILY XXXXXXXXXX 180
PTTTTTHRSD TQLPPPLLLP HFVTRRRDTR PSPRLSWGRD APERMLGGGG DTGHRDSQMG 240
AELREETRFE SVPETQNGFA VFTKSMQKFG DVIERNITEI SYQFMDGSGL VTIPLLTHYL 300
SLSG*
|
| Best hit in Arabidopsis thaliana ? help
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| Hit ID |
E-value |
Description |
| AT3G14180.1 | 1e-12 | sequence-specific DNA binding transcription factors |
