PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_26325A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family Trihelix
Protein Properties Length: 305aa    MW: 34746.2 Da    PI: 10.136
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_26325AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix35.33.1e-1174165185
                   trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegek...krtsesss 77 
                                +Wt+  + aL++a  ++  r++r+  ++  W ev++       +   + s  qC+++++ l+k++kk+ke+++   +r+ +++s
  Oropetium_20150105_26325A  74 EWTEGSTFALLDAWGDRFVRSGRRGIRAEEWLEVADLAsaadGRPEGHFSESQCRNRIDTLRKKFKKEKERMRmaaRRSRPTTS 157
                                5**********************************99987775555578999*****************987622255788899 PP

                   trihelix  78 tcpyfdql 85 
                                +++yfd++
  Oropetium_20150105_26325A 158 KWVYFDKM 165
                                *******9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.1E-1673167No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MGDDAXXXXX XXXXXXXXXX XXXRSPSSPH TKRRRTDRYA LGFEFAPRLA PYEVPSSPER  60
IPSPEAPPPR ASPEWTEGST FALLDAWGDR FVRSGRRGIR AEEWLEVADL ASAADGRPEG  120
HFSESQCRNR IDTLRKKFKK EKERMRMAAR RSRPTTSKWV YFDKMMSILY XXXXXXXXXX  180
PTTTTTHRSD TQLPPPLLLP HFVTRRRDTR PSPRLSWGRD APERMLGGGG DTGHRDSQMG  240
AELREETRFE SVPETQNGFA VFTKSMQKFG DVIERNITEI SYQFMDGSGL VTIPLLTHYL  300
SLSG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_26325A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004969765.13e-72trihelix transcription factor ASIL1
TrEMBLA0A0A9QK031e-71A0A0A9QK03_ARUDO; Uncharacterized protein
STRINGSi002033m1e-71(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80902224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14180.11e-12sequence-specific DNA binding transcription factors