PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

NAC

Protein Properties

Length: 306aa MW: 34981.1 Da PI: 7.7007

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_26117A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	159.8	1e-49	32	163	3	128
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk......kvkaeekewyfFskrdkkyatgkrknratks 80 pGfrFhPtd+elv +yLk+kve+k +++ ++i+e+d+yk++PwdLp+ + a+ekewyfF+ r +ky+++ r+nr+t s Oropetium_20150105_26117A 32 PGFRFHPTDQELVGFYLKRKVERKGFSI-DIIQETDVYKHDPWDLPSearhvvQQGAGEKEWYFFCLRGRKYRNSIRPNRVTGS 114 9*************************.99**********954677654445889******************** PP NAM 81 gyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 g+Wkatg dk++++ ++++vglkk+Lv+y+g+a kg+ktdW+mhe+rl Oropetium_20150105_26117A 115 GFWKATGIDKPIHDGgGESVVGLKKSLVYYRGSAGKGTKTDWMMHEFRL 163 **********866677*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	53.391	30	185	IPR003441	NAC domain
SuperFamily	SSF101941	3.14E-54	31	185	IPR003441	NAC domain
Pfam	PF02365	4.9E-25	32	163	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 306 aa Download sequence Send to blast
MEKKPIMEME ERMKDTGGSI EDGRIEDDME FPGFRFHPTD QELVGFYLKR KVERKGFSID 60 IIQETDVYKH DPWDLPSEAR HVVQQGAGEK EWYFFCLRGR KYRNSIRPNR VTGSGFWKAT 120 GIDKPIHDGG GESVVGLKKS LVYYRGSAGK GTKTDWMMHE FRLPSSSSAD FQDAEIWTVC 180 RIFKRNLSNN RRFQQQKREK RSHQQQQKQS YYGYQHPLYT AGCASMATSF ESMTRDLSEA 240 SHHNCHQFLL HGGFHSATAP PPDVTTTASA SPSALAWSDL TSFASNTWDE LGRILDISTD 300 MTTYF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	6e-48	32	191	19	171	NO APICAL MERISTEM PROTEIN
1ut4_B	6e-48	32	191	19	171	NO APICAL MERISTEM PROTEIN
1ut7_A	6e-48	32	191	19	171	NO APICAL MERISTEM PROTEIN
1ut7_B	6e-48	32	191	19	171	NO APICAL MERISTEM PROTEIN
3swm_A	5e-48	32	191	22	174	NAC domain-containing protein 19
3swm_B	5e-48	32	191	22	174	NAC domain-containing protein 19
3swm_C	5e-48	32	191	22	174	NAC domain-containing protein 19
3swm_D	5e-48	32	191	22	174	NAC domain-containing protein 19
3swp_A	5e-48	32	191	22	174	NAC domain-containing protein 19
3swp_B	5e-48	32	191	22	174	NAC domain-containing protein 19
3swp_C	5e-48	32	191	22	174	NAC domain-containing protein 19
3swp_D	5e-48	32	191	22	174	NAC domain-containing protein 19
4dul_A	6e-48	32	191	19	171	NAC domain-containing protein 19
4dul_B	6e-48	32	191	19	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269\|PubMed:22345491}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_26117A

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269\|PubMed:22345491}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025809001.1	1e-112	transcription factor JUNGBRUNNEN 1-like
Swissprot	Q9SK55	3e-76	NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBL	A0A1E5WKN5	1e-127	A0A1E5WKN5_9POAL; Transcription factor JUNGBRUNNEN 1
STRING	Pavir.Ca02638.1.p	1e-119	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1191	38	129

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43000.1	6e-78	NAC domain containing protein 42

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_26117A

Publications ? help Back to Top
Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins. Plant Signal Behav, 2016. 11(6): p. e1181245 [PMID:27159137] Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling. Nat Plants, 2016. 2: p. 16013 [PMID:27249348] Shahnejat-Bushehri S, et al. Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato. Front Plant Sci, 2017. 8: p. 214 [PMID:28326087] Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways. Plant J., 2017. 92(6): p. 1106-1120 [PMID:29032592] Ebrahimian-Motlagh S, et al. JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13. Front Plant Sci, 2017. 8: p. 2118 [PMID:29326734]