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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Oropetium_20150105_26117A |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family |
NAC |
Protein Properties |
Length: 306aa MW: 34981.1 Da PI: 7.7007 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Oropetium_20150105_26117A | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 159.8 | 1e-49 | 32 | 163 | 3 | 128 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk......kvkaeekewyfFskrdkkyatgkrknratks 80
pGfrFhPtd+elv +yLk+kve+k +++ ++i+e+d+yk++PwdLp+ + a+ekewyfF+ r +ky+++ r+nr+t s
Oropetium_20150105_26117A 32 PGFRFHPTDQELVGFYLKRKVERKGFSI-DIIQETDVYKHDPWDLPSearhvvQQGAGEKEWYFFCLRGRKYRNSIRPNRVTGS 114
9***************************.99**************954677654445889************************ PP
NAM 81 gyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
g+Wkatg dk++++ ++++vglkk+Lv+y+g+a kg+ktdW+mhe+rl
Oropetium_20150105_26117A 115 GFWKATGIDKPIHDGgGESVVGLKKSLVYYRGSAGKGTKTDWMMHEFRL 163
**************866677***************************98 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 306 aa
Download sequence Send
to blast |
MEKKPIMEME ERMKDTGGSI EDGRIEDDME FPGFRFHPTD QELVGFYLKR KVERKGFSID 60 IIQETDVYKH DPWDLPSEAR HVVQQGAGEK EWYFFCLRGR KYRNSIRPNR VTGSGFWKAT 120 GIDKPIHDGG GESVVGLKKS LVYYRGSAGK GTKTDWMMHE FRLPSSSSAD FQDAEIWTVC 180 RIFKRNLSNN RRFQQQKREK RSHQQQQKQS YYGYQHPLYT AGCASMATSF ESMTRDLSEA 240 SHHNCHQFLL HGGFHSATAP PPDVTTTASA SPSALAWSDL TSFASNTWDE LGRILDISTD 300 MTTYF*
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1ut4_A | 6e-48 | 32 | 191 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 6e-48 | 32 | 191 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 6e-48 | 32 | 191 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 6e-48 | 32 | 191 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 5e-48 | 32 | 191 | 22 | 174 | NAC domain-containing protein 19 |
3swm_B | 5e-48 | 32 | 191 | 22 | 174 | NAC domain-containing protein 19 |
3swm_C | 5e-48 | 32 | 191 | 22 | 174 | NAC domain-containing protein 19 |
3swm_D | 5e-48 | 32 | 191 | 22 | 174 | NAC domain-containing protein 19 |
3swp_A | 5e-48 | 32 | 191 | 22 | 174 | NAC domain-containing protein 19 |
3swp_B | 5e-48 | 32 | 191 | 22 | 174 | NAC domain-containing protein 19 |
3swp_C | 5e-48 | 32 | 191 | 22 | 174 | NAC domain-containing protein 19 |
3swp_D | 5e-48 | 32 | 191 | 22 | 174 | NAC domain-containing protein 19 |
4dul_A | 6e-48 | 32 | 191 | 19 | 171 | NAC domain-containing protein 19 |
4dul_B | 6e-48 | 32 | 191 | 19 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help
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Source |
Description |
UniProt | Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}. |
Publications
? help Back to Top |
- Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S
JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins. Plant Signal Behav, 2016. 11(6): p. e1181245 [PMID:27159137] - Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S
Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling. Nat Plants, 2016. 2: p. 16013 [PMID:27249348] - Shahnejat-Bushehri S, et al.
Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato. Front Plant Sci, 2017. 8: p. 214 [PMID:28326087] - Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC
Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways. Plant J., 2017. 92(6): p. 1106-1120 [PMID:29032592] - Ebrahimian-Motlagh S, et al.
JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13. Front Plant Sci, 2017. 8: p. 2118 [PMID:29326734]
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