PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_26020A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family TALE
Protein Properties Length: 651aa    MW: 72006.9 Da    PI: 6.5982
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_26020AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.26.8e-094074441954
                                HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                   Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                                Fe   ++yp+ +e+  LA+++gLt +q+++WF N R +
  Oropetium_20150105_26020A 407 FEHflHPYPKDSEKLMLARQTGLTRSQISNWFINARVR 444
                                665559******************************87 PP
2BELL118.14.1e-38270341172
                       BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                                e+qelq+k akL+ +l+eVd++Yk+y++q+q v+ssF++vag g+a+pYt++Al++iSrhFrcLkdai +qi
  Oropetium_20150105_26020A 270 EKQELQNKMAKLMAMLDEVDRKYKHYYHQMQNVVSSFDVVAGPGAARPYTAVALQTISRHFRCLKDAINDQI 341
                                689*******************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005744.3E-59194339IPR006563POX domain
PfamPF075263.1E-51200337IPR006563POX domain
PROSITE profilePS5007112.39385448IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.5E-24387447IPR009057Homeodomain-like
SMARTSM003898.4E-7388452IPR001356Homeobox domain
CDDcd000862.60E-11388445No hitNo description
SuperFamilySSF466892.18E-15389449IPR009057Homeodomain-like
PfamPF059201.1E-17405444IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 651 aa     Download sequence    Send to blast
MATYYSSPGS ERDSQNMYSR DPGSASYPMP SALGNLLYLN NPNSGPYTEF SGILQSQQNC  60
MNMPDPGHPS VMSQDSSARE SDMLGSHQGQ RTFNSVKDMK NEMLMHMMDG SQSSTADLIH  120
DDAHNGAQLE FGVLNNHSSS NVPSVQGQGL SLSLNTQILA PSLPYWSIKP DMLSPHPYHD  180
SLRIDEIRMK SMQSDASRAI RNSRYLKAAQ ELLDEVVNVW KNIKQKAQKE QDDTGRTDGK  240
ETEGGPKSEG VSSNPKESAA SAAPELSTAE KQELQNKMAK LMAMLDEVDR KYKHYYHQMQ  300
NVVSSFDVVA GPGAARPYTA VALQTISRHF RCLKDAINDQ INVIRKKLGE EESSSGKEGK  360
LTRLRYIDQQ LRQQRAFQQY GMIPQNAWRP QRGLPENSVT ILRAWLFEHF LHPYPKDSEK  420
LMLARQTGLT RSQISNWFIN ARVRLXXXXX XXXXXXXXXX XXXXXXSSSD NAPRSKGKVA  480
SSEDKEDLKS STPRVCETSQ LGESRGSIGT VNIGGAPVGF QNEANPDDSF MNLMLKEQRS  540
NGADGGLLLH NAVTHHHPDD NARFMAYHFS ELGGYGNGNV SLTLGLQHSS SNLSAPNAQQ  600
SFPGVGADDI YNATAPIGGV SVASSDFESM NQMDQRQRFE QSPLLHDFVA *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A1e-13394445556Homeobox protein Meis2
3k2a_B1e-13394445556Homeobox protein Meis2
4xrs_A8e-14394445152Homeobox protein Meis1
4xrs_B8e-14394445152Homeobox protein Meis1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_26020A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004963319.10.0BEL1-like homeodomain protein 7
RefseqXP_004963320.10.0BEL1-like homeodomain protein 7
RefseqXP_004963321.10.0BEL1-like homeodomain protein 7
TrEMBLK3Z4G80.0K3Z4G8_SETIT; Uncharacterized protein
STRINGSi021437m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP90138131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34610.27e-95BEL1-like homeodomain 6