PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_25744A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family MYB_related
Protein Properties Length: 260aa    MW: 28129.3 Da    PI: 7.0794
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_25744AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.33.1e-12556147
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
            Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                               +++WT+eE+e l ++v ++G g W+tI +          R+  ++k++w+++
  Oropetium_20150105_25744A  5 KQKWTAEEEEALRRGVLKHGAGKWRTIQKDPEfspvlSSRSNIDLKDKWRNL 56
                               79***********************************9************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.424160IPR017930Myb domain
SuperFamilySSF466895.98E-16258IPR009057Homeodomain-like
SMARTSM007171.2E-7459IPR001005SANT/Myb domain
PfamPF002499.8E-9556IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-14556IPR009057Homeodomain-like
CDDcd116602.62E-20656No hitNo description
SuperFamilySSF467855.44E-6109148IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.2E-6113148IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005388.3E-5114147IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MGAPKQKWTA EEEEALRRGV LKHGAGKWRT IQKDPEFSPV LSSRSNIDLK DKWRNLSFGG  60
GQGSXXXXXX XXXXASSSSP SSVALVLHTS SKLTEASAPA DAEKKPQDGK NPQKYSAMIM  120
EALSELNEPN GSEVTAIQGF IEIDNKYYKL TDSLATKPPS LTKASTQKQK DPSKSLKVSK  180
NLGIFAAVSP ALEAAAASAA KVADAEAKAH LAHEHMMEAE RILKMAEETE SLLTLAEEIY  240
DRCSRGEIIT VNPVSQKEF*
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats, but may also bind to the single telomeric strand. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00652PBMTransfer from LOC_Os01g51154Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_25744A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3756191e-69AK375619.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3099J10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001105225.11e-106single myb histone 3
SwissprotQ6WLH41e-107SMH3_MAIZE; Single myb histone 3
TrEMBLA0A0A9PJS41e-117A0A0A9PJS4_ARUDO; Smh4
STRINGPavir.Eb02802.1.p1e-104(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92473442
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.33e-31telomere repeat binding factor 1
Publications ? help Back to Top
  1. Soderlund C, et al.
    Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs.
    PLoS Genet., 2009. 5(11): p. e1000740
    [PMID:19936069]
  2. Schnable PS, et al.
    The B73 maize genome: complexity, diversity, and dynamics.
    Science, 2009. 326(5956): p. 1112-5
    [PMID:19965430]