PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

MYB

Protein Properties

Length: 288aa MW: 32395.7 Da PI: 4.7252

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_25498A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	47.9	3.2e-15	41	86	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W ++Ed l + + +G g+W++Ia+ ++ gRt+kqc +rw + Oropetium_20150105_25498A 41 KGSWNAQEDATLREMISIHGEGNWAAIAEGLP-GRTRKQCYERWTNN 86 799***************************.*********986 PP
2	Myb_DNA-binding	56	9.3e-18	95	137	2	45
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 WT+eEd +v+a+k++G++ W++Iar++ gR+ +++k++w+ Oropetium_20150105_25498A 95 SLWTEEEDRDFVEAHKLHGNR-WSAIARCLKSGRSQNSVKNHWN 137 56*****************.*******************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	23.316	36	91	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.5E-20	36	90	IPR009057	Homeodomain-like
SuperFamily	SSF46689	6.12E-26	38	136	IPR009057	Homeodomain-like
SMART	SM00717	7.8E-17	40	89	IPR001005	SANT/Myb domain
Pfam	PF00249	8.1E-15	41	87	IPR001005	SANT/Myb domain
CDD	cd00167	2.32E-14	43	87	No hit	No description
Gene3D	G3DSA:1.10.10.60	8.5E-16	91	141	IPR009057	Homeodomain-like
PROSITE profile	PS51294	16.775	92	144	IPR017930	Myb domain
SMART	SM00717	2.0E-14	93	142	IPR001005	SANT/Myb domain
Pfam	PF00249	6.6E-15	95	137	IPR001005	SANT/Myb domain
CDD	cd00167	1.07E-10	97	137	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 288 aa Download sequence Send to blast
METSIFNQHV ELVHEKSQQD AIRGWAGGGV NSQASAPQII KGSWNAQEDA TLREMISIHG 60 EGNWAAIAEG LPGRTRKQCY ERWTNNLRPE IKQRSLWTEE EDRDFVEAHK LHGNRWSAIA 120 RCLKSGRSQN SVKNHWNATM RSLGAKRWIK NKRSGQQVAF GQVTLLEEYI LSLQETFTES 180 ELLGEPGHEE FQAIPNTVNL TEGPAPRPDQ VMQGEVAHQN ASAPSDSCNP QEIGSYTDPT 240 SLNVMQGTQE YDDNAFNDLD VNYDLPFFMD DVNFAFELDG KDTWKNS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	1e-30	37	141	3	105	B-MYB

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_25498A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1882	33	101

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G11050.1	2e-35	myb domain protein 64

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_25498A