 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Oropetium_20150105_24933A |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
|
| Family |
NAC |
| Protein Properties |
Length: 313aa MW: 34739.3 Da PI: 6.0899 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Oropetium_20150105_24933A | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 156.5 | 1.1e-48 | 6 | 134 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgy 82
lppGfrFhPtd el v+yLk+k+ gk++++ ++i+++d+yk+ PwdLp+ ++++++ wyfF++r++ky++g r+nr+t gy
Oropetium_20150105_24933A 6 LPPGFRFHPTDIELTVYYLKRKLLGKHIRC-NAITDIDLYKFAPWDLPEkaSLESNDLVWYFFCRRNRKYSSGVRTNRSTGVGY 88
79****************************.89***************52345556669************************* PP
NAM 83 WkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
Wkatgkd++v+ +++ vg+k+tLvf+ g+ p+g +tdWvm eyrle
Oropetium_20150105_24933A 89 WKATGKDRPVIY-NSRIVGMKRTLVFHLGKPPRGDRTDWVMYEYRLE 134
************.999*****************************85 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 313 aa
Download sequence Send
to blast |
MAKTSLPPGF RFHPTDIELT VYYLKRKLLG KHIRCNAITD IDLYKFAPWD LPEKASLESN 60
DLVWYFFCRR NRKYSSGVRT NRSTGVGYWK ATGKDRPVIY NSRIVGMKRT LVFHLGKPPR 120
GDRTDWVMYE YRLEDKDLAA CGVKLVWFSL CDACVLCKIF QKSGQGPKIG AQYGAPFNEA 180
DWNDCIMEYS SCVPSVTPCP PESSHDGLYS AGQHLAVCND NNVSLGLLSE SNGSANHVQV 240
CPNRAPDIPF DSIHLHLLAE IISSPSMNLL CTADEDGSQA GSAPDIDNND RISLDGNETI 300
FDGIDDLSPQ SM*
|
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | BT068371 | 1e-157 | BT068371.1 Zea mays full-length cDNA clone ZM_BFb0135E15 mRNA, complete cds. |
| GenBank | BT068532 | 1e-157 | BT068532.1 Zea mays full-length cDNA clone ZM_BFb0292O13 mRNA, complete cds. |
| GenBank | BT083901 | 1e-157 | BT083901.1 Zea mays full-length cDNA clone ZM_BFb0052I14 mRNA, complete cds. |
| GenBank | KJ727952 | 1e-157 | KJ727952.1 Zea mays clone pUT6050 NAC transcription factor (NAC120) mRNA, partial cds. |
