PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_24285A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

C2H2

Protein Properties

Length: 181aa MW: 19458.8 Da PI: 6.9912

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_24285A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.4	1.2e-05	49	71	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C + F++ L H+++H Oropetium_20150105_24285A 49 YTCGYCRREFRSAQALGGHMNVH 71 9********************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.89E-6	47	76	No hit	No description
PROSITE profile	PS50157	11.074	49	76	IPR007087	Zinc finger, C2H2
Pfam	PF13912	1.0E-5	49	72	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	51	71	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 181 aa Download sequence Send to blast
MERDRHGRSL KQQTAWTPGH NFSLAAAAGY CFSSSSWPAA LSPPPSSSYT CGYCRREFRS 60 AQALGGHMNV HRRDRARLRQ CFPPPNPSNL QMRTAAPCRA APPIPNLNFL PPEPEPPAVY 120 SFFSTTTAMS AAETMKYASA AAVEVNLDLG IGGVCSHDGT AAAEDDGELD LELRLGCSWE 180 *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_24285A

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004975075.2	3e-49	transcriptional regulator SUPERMAN
TrEMBL	A0A368RR52	1e-47	A0A368RR52_SETIT; Uncharacterized protein
STRING	Pavir.J31403.1.p	6e-51	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4667	30	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42410.1	2e-15	zinc finger protein 11

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_24285A