PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_24073A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family C3H
Protein Properties Length: 399aa    MW: 41917.7 Da    PI: 8.904
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_24073AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.32.3e-07223245426
                                ---SGGGGTS--TTTTT-SS-SS CS
                    zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                                ++C+ f+  G C++Gd C FaHg
  Oropetium_20150105_24073A 223 VPCNSFRLPGGCPRGDGCAFAHG 245
                                79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.202.8E-1453135IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484034.15E-1254134IPR020683Ankyrin repeat-containing domain
PfamPF127962.8E-754123IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029714.92854129IPR020683Ankyrin repeat-containing domain
SMARTSM00248105484IPR002110Ankyrin repeat
CDDcd002041.07E-656104No hitNo description
PROSITE profilePS5008810.8289124IPR002110Ankyrin repeat
SMARTSM002485.289121IPR002110Ankyrin repeat
SuperFamilySSF902298.11E-6219248IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.512219247IPR000571Zinc finger, CCCH-type
SMARTSM003560.0019219246IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.6E-7223246IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-5223245IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MAAISLYRRG MVSALLELAS TDDAEGFCAA LXXXXXXXXX XEMALWPGPS KVKEPRTPLM  60
VAATNGSAAV VALLLRLPCV DVNRRAAIDG ATALHCATSG GSPNAAAVVC ALLAGGADWS  120
VRDSAGRVPA DVVRAHPAAV NGLAACLAPL LPRCTSGRKE YPADPTLXXX XXXXXXXXYF  180
RMYVFKVRPC ARAYVHDWTA CPFAHPGENA RRRDPRLSSY TAVPCNSFRL PGGCPRGDGC  240
AFAHGVFESW LHPAQYRTKP CIDGYACTRP ICFFAHAEHE LRHVPRDDTG SCVISPRALS  300
DMAAAAALGG GTRSVAAAQR LLVASMNSAR SWPSSSSTGH HGPALTSGSR LKLPAIAPPP  360
TYMAALPSSS SSGNDHGSPV GASTSQLLAR IRQQLGVS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_24073A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006657856.11e-100PREDICTED: zinc finger CCCH domain-containing protein 50
RefseqXP_015695270.11e-100PREDICTED: zinc finger CCCH domain-containing protein 50
SwissprotQ84SL27e-99C3H50_ORYSJ; Zinc finger CCCH domain-containing protein 50
TrEMBLA0A0D9X0H71e-101A0A0D9X0H7_9ORYZ; Uncharacterized protein
STRINGLPERR07G16470.11e-102(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82337126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58620.14e-67C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]