PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_24050A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family bHLH
Protein Properties Length: 359aa    MW: 38748.9 Da    PI: 6.0573
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_24050AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.92.8e-16111157455
                                HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                        HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                 hn  E+rRR+riN+++  L++l+P++      K +Ka++L +A+eY+k+Lq
  Oropetium_20150105_24050A 111 VHNLSEKRRRSRINEKMKALQSLIPNS-----NKTDKASMLDEAIEYLKQLQ 157
                                6*************************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.82E-18103161No hitNo description
SuperFamilySSF474591.57E-20104167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-19104167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.063107156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.9E-14111157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.0E-18113162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009409Biological Processresponse to cold
GO:0010114Biological Processresponse to red light
GO:0010154Biological Processfruit development
GO:0010187Biological Processnegative regulation of seed germination
GO:0048440Biological Processcarpel development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MDEQGLGGFG LGRAAVQGRH GGRDAMMLLQ QQQQHHQQWQ REQLEEAEEA ARRQMFGGVA  60
FPGALGYAQQ AGDGEEAAGL GDSDAGGSEP EPAQARPRGG SGSKRSRAAE VHNLSEKRRR  120
SRINEKMKAL QSLIPNSNKT DKASMLDEAI EYLKQLQLQV QMLSMRNGVY LNPPYLSGAL  180
EAAQASQMFA ALGGGNIAAS SSGAVLLPVN QVSGAQHQAF DALNPPQSQP ASLILPNVPD  240
KTISEPPFHL ESSQSHLQSF QVPESSELPR RFPADLYFPL LDDASGGNNG KTSANFRPRE  300
RNDMNPIRQE SSIINTDRFD GCSSSKEGSH DMVPKNTGHS LGSGDWETEV RYQSRAMT*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00035PBMTransfer from AT4G36930Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_24050A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0353601e-109BT035360.1 Zea mays full-length cDNA clone ZM_BFb0057H06 mRNA, complete cds.
GenBankKJ7268601e-109KJ726860.1 Zea mays clone pUT3401 bHLH transcription factor (bHLH125) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025811540.11e-129uncharacterized protein LOC112889235 isoform X1
TrEMBLA0A2T7E2L41e-128A0A2T7E2L4_9POAL; Uncharacterized protein
STRINGSb10g004500.11e-123(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33363776
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.12e-34bHLH family protein