PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_23977A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

C2H2

Protein Properties

Length: 421aa MW: 45032.7 Da PI: 8.555

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_23977A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	19	3.8e-06	22	44	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cgk F r nL+ H r H Oropetium_20150105_23977A 22 FVCEICGKGFQRDQNLQLHRRGH 44 89*******************88 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.21E-5	21	44	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.1E-5	22	44	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.012	22	44	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	11.614	22	44	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	24	44	IPR007087	Zinc finger, C2H2
SMART	SM00355	120	65	95	IPR015880	Zinc finger, C2H2-like
SuperFamily	SSF57667	1.21E-5	95	120	No hit	No description
SMART	SM00355	230	100	120	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 421 aa Download sequence Send to blast
MKNPDAEVVA LSPATLMATN RFVCEICGKG FQRDQNLQLH RRGHNLPWKL KQRGTGKEAP 60 RKKVYVCPET SCVHHDPSRA LGDLTGIKKH FFRKHGEKKW KCDKCAKKYA VHSDWKAHSK 120 ICGTREYKCD CGTIFSRRDS FITHRAFCDA LTEESAKAAI GLNAMAAPAA LLFSPPPQQQ 180 PQQQQQVMQH HQEQLAAAFQ QEQQQHHHQQ EVMQPQHCNL AMKTEMPPWP TMPAYDHPLL 240 CNAAAAAAQS SATSVTAQQQ LPTASAHLSA TALLQKAAQM GATISSAGYT QRAGAATSAP 300 VGFGLGLPGL TAQPDAGAMG GGLARSASSH GRSGEDGGGG AGGGGGDGMT RDFLGLRALS 360 HRDILNLAGL DSCMGAAGNP NTSMTSCYEP PQQHAHAHAQ QQPPQQESNN EPWHGMGSHS 420 *

Sequence ? help Back to Top

Protein Sequence Length: 421 aa Download sequence Send to blast

MKNPDAEVVA LSPATLMATN RFVCEICGKG FQRDQNLQLH RRGHNLPWKL KQRGTGKEAP  60
RKKVYVCPET SCVHHDPSRA LGDLTGIKKH FFRKHGEKKW KCDKCAKKYA VHSDWKAHSK  120
ICGTREYKCD CGTIFSRRDS FITHRAFCDA LTEESAKAAI GLNAMAAPAA LLFSPPPQQQ  180
PQQQQQVMQH HQEQLAAAFQ QEQQQHHHQQ EVMQPQHCNL AMKTEMPPWP TMPAYDHPLL  240
CNAAAAAAQS SATSVTAQQQ LPTASAHLSA TALLQKAAQM GATISSAGYT QRAGAATSAP  300
VGFGLGLPGL TAQPDAGAMG GGLARSASSH GRSGEDGGGG AGGGGGDGMT RDFLGLRALS  360
HRDILNLAGL DSCMGAAGNP NTSMTSCYEP PQQHAHAHAQ QQPPQQESNN EPWHGMGSHS  420
*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	8e-33	96	159	3	66	Zinc finger protein JACKDAW
5b3h_F	8e-33	96	159	3	66	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000305}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_23977A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT034365	0.0	BT034365.1 Zea mays full-length cDNA clone ZM_BFb0129C20 mRNA, complete cds.
GenBank	BT054620	0.0	BT054620.1 Zea mays full-length cDNA clone ZM_BFb0296L18 mRNA, complete cds.
GenBank	BT056151	0.0	BT056151.1 Zea mays full-length cDNA clone ZM_BFb0048E20 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004969529.1	0.0	protein indeterminate-domain 7
Swissprot	Q8H1F5	1e-113	IDD7_ARATH; Protein indeterminate-domain 7
TrEMBL	K3XHB6	0.0	K3XHB6_SETIT; Uncharacterized protein
STRING	Si001287m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP202	38	320

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66730.1	4e-89	C2H2-like zinc finger protein

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_23977A

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]