PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_23951A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family bHLH
Protein Properties Length: 439aa    MW: 45136.5 Da    PI: 8.7756
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_23951AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.45.3e-08330370954
                                HHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                        HLH   9 ErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                                 r+RR+ri +++  L++l+P  a      K++ a++L +A +Y++ L
  Oropetium_20150105_23951A 330 ARQRRERISERLRALQKLVPGgA------KMDTASMLDEAANYLRFL 370
                                69******************966......***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.072321370IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-11326379IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.45E-11327375No hitNo description
SMARTSM003531.7E-13327376IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.33E-13330383IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-5330370IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MDYSFSDMIL SESAWSGGGG GDMLLSDLGS GGGASGGGVD AGTTNMTVLE RXXXXXXXXX  60
XXXXXXXXXX XIPSCGGGGG GKLVAGGDAV AFSAMATLTT APGYADVDAD VLQHRHRHQG  120
ATGTAAVDYD LTPATAAVAA ATNCAAFTNA VLSGNETAVT TTAAATTNRR FEGGRDGSAG  180
RKQRRPSSRK RKAAAGAEAS SSAPTTQESS LCSLLQVSTA VTAGEGGGIQ IAFSTGAHQA  240
ANKRSKPSLS SSGSSSISFX XXXXXXXXXG GDDPAAAYEP DTEALAQVKE MIYRAAAMRP  300
VSLGSGSSSD AERPRRRNVR ISSDPQTVAA RQRRERISER LRALQKLVPG GAKMDTASML  360
DEAANYLRFL KTQVRELQTL DRRNYGGNNA NANASNVNNA AGALMMSYNS AAAFAFPAAA  420
AAVETLREGR GGGVEQQI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1330335RQRRER
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_23951A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008656601.12e-92transcription factor bHLH87
TrEMBLA0A3L6STE11e-91A0A3L6STE1_PANMI; Transcription factor bHLH87-like
STRINGGRMZM2G164341_P019e-92(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP154637106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21330.12e-31bHLH family protein