PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_23840A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family C2H2
Protein Properties Length: 483aa    MW: 51679.8 Da    PI: 11.2769
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_23840AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2163.5e-05246268223
                                EETTTTEEESSHHHHHHHHHH.T CS
                    zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                                 C+ Cg++F+  ++L++H+   H
  Oropetium_20150105_23840A 246 ACSQCGEVFTKAESLEHHQAIrH 268
                                6******************9877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000280245268IPR007087Zinc finger, C2H2
PROSITE profilePS501579.619245273IPR007087Zinc finger, C2H2
SuperFamilySSF563992.42E-10270351No hitNo description
Gene3DG3DSA:3.90.228.103.9E-5272350IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene3DG3DSA:3.90.228.103.9E-5385471IPR012317Poly(ADP-ribose) polymerase, catalytic domain
SuperFamilySSF563992.42E-10385475No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 483 aa     Download sequence    Send to blast
MALATLLLXX XXXXXXXXAA GGDHSNSRRH QHHHGSSKRK KKPPPLSPQP SLPPPARTPP  60
GAAGSRRRAT AAASSSSSRT KSPRVATAAA KTAALYQHQP HRSVSSKNKA XXXXXXXXXX  120
XXQLKSLLSC RSATSAARVH DPAAPSALAR LRGGGAGACG ASLCAMRXXX XXXXXXXXXX  180
XXXXDRDTAP LTRRHRAHXX XXXXXXXXGS SGGHSSLRGL SGCYECRAIN VEPMSRRYPR  240
PRELCACSQC GEVFTKAESL EHHQAIRHAV SELGPEDSGR NIVEIIFKSS WQKRDGRPAC  300
QVDRILKVHN APRTVARFEA YRDAVRARRC VARAAADGNE LLRFHSAPXX XXXXXXXXTS  360
LCGAVSTTAA AASSSAAPNN TCCGVCSAIR HGFAPWVGAH PLGVRTTASS GRAHDGSVSP  420
PAANNNSNNN GGSRAMLVCR VIAGRVRRRD GPXXXXXXXX XXXSPFDSVA GEDAASSSVY  480
YE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_23840A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822927.11e-156uncharacterized protein LOC112898841
TrEMBLA0A3L6PWI31e-156A0A3L6PWI3_PANMI; Uncharacterized protein
STRINGGRMZM2G158141_P011e-153(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124312731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.14e-54C2H2-like zinc finger protein