PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_23793A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family C3H
Protein Properties Length: 1887aa    MW: 204507 Da    PI: 7.2699
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_23793AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.25.7e-08751779125
                                --S---SGGGGTS....--TTTTT-SS-S CS
                    zf-CCCH   1 yktelCrffartG....tCkyGdrCkFaH 25 
                                +kt+lC++f+r G     C++G++C++aH
  Oropetium_20150105_23793A 751 WKTSLCSYFRRRGagaeGCSHGESCRYAH 779
                                8**************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF522833.19E-2025155No hitNo description
Gene3DG3DSA:3.40.50.7202.4E-2525141IPR016040NAD(P)-binding domain
PfamPF003891.1E-1672332IPR006139D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
CDDcd121561.72E-12384332No hitNo description
SuperFamilySSF517357.13E-47127309IPR016040NAD(P)-binding domain
PfamPF028261.3E-44135309IPR006140D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain
Gene3DG3DSA:3.40.50.7201.4E-48142312IPR016040NAD(P)-binding domain
CDDcd121562.47E-118355662No hitNo description
Gene3DG3DSA:3.40.50.7201.3E-24356472IPR016040NAD(P)-binding domain
SuperFamilySSF522831.51E-21357492No hitNo description
PfamPF003892.9E-16403664IPR006139D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
SuperFamilySSF517352.68E-49459639IPR016040NAD(P)-binding domain
PfamPF028261.1E-47466639IPR006140D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain
Gene3DG3DSA:3.40.50.7203.4E-50473642IPR016040NAD(P)-binding domain
Gene3DG3DSA:4.10.1000.109.2E-12747787IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-5748786IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.469750782IPR000571Zinc finger, CCCH-type
SMARTSM003560.0014750781IPR000571Zinc finger, CCCH-type
PfamPF006429.7E-6751779IPR000571Zinc finger, CCCH-type
SuperFamilySSF533351.44E-17917943IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533351.44E-179851165IPR029063S-adenosyl-L-methionine-dependent methyltransferase
Gene3DG3DSA:3.40.50.1503.3E-2511231165IPR029063S-adenosyl-L-methionine-dependent methyltransferase
Gene3DG3DSA:3.40.50.1503.3E-2512701328IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533351.44E-1712761327IPR029063S-adenosyl-L-methionine-dependent methyltransferase
PfamPF059581.4E-612801324IPR010280(Uracil-5)-methyltransferase family
PROSITE patternPS01230012841316IPR030390RNA methyltransferase TrmA, active site
PROSITE profilePS5129219.01116281691IPR011016Zinc finger, RING-CH-type
Gene3DG3DSA:3.30.40.102.7E-1516311688IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF578509.59E-1216321688No hitNo description
SMARTSM007442.8E-1616351685IPR011016Zinc finger, RING-CH-type
PfamPF129065.1E-1116361684IPR011016Zinc finger, RING-CH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006396Biological ProcessRNA processing
GO:0055114Biological Processoxidation-reduction process
GO:0008173Molecular FunctionRNA methyltransferase activity
GO:0008270Molecular Functionzinc ion binding
GO:0016616Molecular Functionoxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
GO:0051287Molecular FunctionNAD binding
Sequence ? help Back to Top
Protein Sequence    Length: 1887 aa     Download sequence    Send to blast
MASNRHPLQG HHSGETEDAA ALLPALLVFR HMDVAFHSAL RQRFRVLDFF TSGQPLLAFL  60
AAATALPEPP RAAVVVGGGA VRVDAAFLDA VPSLRCIVTT GTGVDHIHLD ECARRGVTVA  120
NAGKVYSTDV ADHAVGMLID VLRRISATER FLRQGLRPVK GDCYPLGSKL GVKRVGIIGL  180
GNIGLLIAKR LEPFGCIIYY NSRRPKNSVS YKYFPNVLDL ASESDVLIIA CALNEETRHI  240
VNKGVLEALG KDGVVINIGR GANVNEAELV WALKDRRIAG AGLDVFENEP KVPKELLSMD  300
NVVLSPHTAV LTLESRSDLR DQTIANLEAF FSVPAMATAS SDAAARLPSE QAALPTLLLY  360
WRMHAPFAAA LRERFRVLDM VASDQPLPAF LAAAAASPDP PRAAVIMGGI DRLVDAAFLD  420
AVPSLRCVVS TGAGVDQIDL DECARRGVAV ANTGTIYSAD VADRAVGMLI DVLRRVSAAD  480
RFVRHGLWPL QGAYPLGSKV GGKRIGIIGL GNIGLLIAKR LEAFGCIIYY NSRRPKDSVS  540
YKYFASVIDL ASESDVLIVA CALNKETWHI VNEDVLEALG KDGVIISIGR GANVDEAELV  600
RALKDGRIAG AGIDVFQNEP KVPEELLSMD NVVLSPHIAV LTLESRSDLH DQTIANLEAF  660
FSGPVQKQKR SLVANSQPSA XXXXXXXXXX XXSPPPXXXX XXXXXXHPEL SGEKRKREES  720
PPVTSNEEAP VASAGGEDAP PSSGGGRHPM WKTSLCSYFR RRGAGAEGCS HGESCRYAHT  780
EEELRPRPDG TWDPTSDRAK KLRKVDSEAQ EAEDEVTGIL YAIAKKKKGM TVGFVTFESI  840
GQLQNAVQVL KENPSGGKEI KIADANRRSH QKVHVDRPVS DNGATTENSG IPPAGDDETA  900
APEMASLSKK CARDAVTPLA HMSYNDQLEH KKHSMAQILK RLTRNARKAC PPAVPLPNWV  960
FKSKEIGCTN DPFYSSGGLP CKFEGILESP IVNGYRNKCD NKSGTQNSRE GVTAVEEPVN  1020
CPNVSKISCK YALIFQDFLQ SSSLPLWSRI DNSGFWRQFT VREGRSPSQA VASQNVESQI  1080
SEVMLIVQVC STGVDDALMK EEFDKLSAAL LQGSAACSPP LPLTTIVVQV VGIEMNESAV  1140
TDAHRNAVIN GIKNCRFICS KAEDVLGSLL TEYLGSPQQD IVASDKNSEI NDTSKNGDIQ  1200
DCSENSSVKV NSSMQKSDNG ENQQSRDMSV DYPTCANDEK IKRNSVDRVN KELDGSHGEP  1260
KEVDENDILA PTACQFKNVV AIVDPPRVGL HPTVIKALRT HPRIRRLVYI SCNPESLVAN  1320
AIELCTPTAE KQEKNKAKKA SLLPTRNKRV FFQFFFFFFF FFFFFVVCGG GVAQESAAME  1380
NPPDRDQDKL TAAPTISMEN PTDARPQSRP HLSIDIPPSI TPDLVLTPTP TPTPTEADTT  1440
TTPTPDGSNY NTKQRRPPRS SSINSSSSAA KPPQRSPSFM LRQTVKSLLP MGSFKSSVKG  1500
GYEASAFSKL LNARIVRTSS LPSDDVDALC SHQVDDKSNS SANACAASSV SGGKTVHMYR  1560
SQSLPLNMKK FNATKSFKRM DSMGGMFRVV PSTPRVVAAT SNVDQAGDIV VPTTTESGGD  1620
EDNDGGEDIP EEDAVCRICM VELSEGSDTT LKLECSCRGE LALAHKDCAV KWFSIKGTRN  1680
CEVCKHEVRN LPVTLLRVQS QRAPNRAAAA NAGTRPTWYM IWHGTPLLVI VSILAYFCFL  1740
EELLAARNGI AALAISLPFS CILGLFSSLT TTSMVGRRYV WIYAVVQFLF VVFFTHLFYK  1800
FLHLQAVISI ILATFAGFGV GMTGNSIIVE ILRXXXXXXX XXXEARRRNR RAPAPPASDQ  1860
TPSSQPSAAS NAQAASDVEN PAVTQA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ba1_A1e-772566325325Hydroxyphenylpyruvate reductase
3baz_A1e-772566325325Hydroxyphenylpyruvate reductase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_23793A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP84933131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28450.11e-125C3H family protein