PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

SBP

Protein Properties

Length: 867aa MW: 94296.8 Da PI: 5.5055

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_23643A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	42.3	2e-13	109	139	1	31
--SSTT-----TT--HHHHHTT--HHHHT-S CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskap 31 +CqvegCeadl+ ak+yhrrhkvCe+h+ka+ Oropetium_20150105_23643A 109 ACQVEGCEADLTAAKDYHRRHKVCEMHAKAK 139 5****************************85 PP
2	SBP	29.2	2.5e-09	135	163	50	78
EETTT--SS--S-STTTT-------S--- CS SBP 50 helsefDeekrsCrrrLakhnerrrkkqa 78 h+ +fD++krsCrrrLa+hn+rrrk+++ Oropetium_20150105_23643A 135 HAKAKFDDGKRSCRRRLAGHNRRRRKTRP 163 67789*********************875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	2.6E-14	102	138	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	18.555	107	161	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	4.32E-22	108	165	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	8.1E-9	110	138	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF48403	8.55E-5	631	724	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	5.73E-6	640	732	No hit	No description
PROSITE profile	PS50297	9.065	665	732	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	1.1E-4	666	726	IPR020683	Ankyrin repeat-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 867 aa Download sequence Send to blast
ERFVATPVPA PVANALELNS SPSSSEEAGA EVARNGAGRG DYDKRKRVVV IDEDEAEDQD 60 PMENNGGALS LRIGSDAVGP GTVESASVNE EERNGKKIKV QGGGSSGPAC QVEGCEADLT 120 AAKDYHRRHK VCEMHAKAKF DDGKRSCRRR LAGHNRRRRK TRPDIAISGT ASIEDKVSNY 180 LLLSLLAGNA ETSNGQELLS NLLRNLGTVA KSLEPVELSK LLEACQSLQN RSNAGTSGTA 240 NALANNSSAE AAGPSNSKPL FTNGSQCGLA SSSAMPLQSK ATMVASPESR ACKIRDFDLN 300 DACDNTEGFE NGQESSPTPG FKAVDSPNCP SWMLRDSTQS PPQTSGNSDS TSTQSLSSSN 360 GDAQCRTDKI VFKLFEKVPS DLPPVLRSQI LGWLSSSPTD IESYIRPGCI ILTVYLRLVE 420 SAWQEFWASG LVFVMVRHQL AFMYNGEVML DRPLVPSSYH YCKILRVRPI AAAYSATVNF 480 RVEGFNLISA SSRLICSFEG HCIFQEDTAT ITDDAELEDG ETECLIFCCP LPGSRGRGFI 540 EVEDSGFSNG FFPFIIAEQD VCSEVSELES IFESSSHEPT DVDDVARNQA LEFLNELGWL 600 LHRANNISKQ DKMEPPLAVF NLWRFRKLGI FAMEREWCSV IKLLLDFLFI GLVDVGSQSP 660 EEVVLSENLL HTAVQRKSVQ MVRFLLRYKP NKNSKGTAQA NLLRPDALGP SAITPLHIAA 720 STTDLEDVLD ALTDDPGLRG NDSYVNLVQK KIDKHLSQGH VVLGVPSSMC PVITDGVKPG 780 DVSLEISRSM PMAASMAKCH LCSRQALKYP RSAVRTFLYR PAMLTMMGVA VVCVCVGILL 840 HTLPKVYAAP TFRWELLERG AILPDR*

Sequence ? help Back to Top

Protein Sequence Length: 867 aa Download sequence Send to blast

ERFVATPVPA PVANALELNS SPSSSEEAGA EVARNGAGRG DYDKRKRVVV IDEDEAEDQD  60
PMENNGGALS LRIGSDAVGP GTVESASVNE EERNGKKIKV QGGGSSGPAC QVEGCEADLT  120
AAKDYHRRHK VCEMHAKAKF DDGKRSCRRR LAGHNRRRRK TRPDIAISGT ASIEDKVSNY  180
LLLSLLAGNA ETSNGQELLS NLLRNLGTVA KSLEPVELSK LLEACQSLQN RSNAGTSGTA  240
NALANNSSAE AAGPSNSKPL FTNGSQCGLA SSSAMPLQSK ATMVASPESR ACKIRDFDLN  300
DACDNTEGFE NGQESSPTPG FKAVDSPNCP SWMLRDSTQS PPQTSGNSDS TSTQSLSSSN  360
GDAQCRTDKI VFKLFEKVPS DLPPVLRSQI LGWLSSSPTD IESYIRPGCI ILTVYLRLVE  420
SAWQEFWASG LVFVMVRHQL AFMYNGEVML DRPLVPSSYH YCKILRVRPI AAAYSATVNF  480
RVEGFNLISA SSRLICSFEG HCIFQEDTAT ITDDAELEDG ETECLIFCCP LPGSRGRGFI  540
EVEDSGFSNG FFPFIIAEQD VCSEVSELES IFESSSHEPT DVDDVARNQA LEFLNELGWL  600
LHRANNISKQ DKMEPPLAVF NLWRFRKLGI FAMEREWCSV IKLLLDFLFI GLVDVGSQSP  660
EEVVLSENLL HTAVQRKSVQ MVRFLLRYKP NKNSKGTAQA NLLRPDALGP SAITPLHIAA  720
STTDLEDVLD ALTDDPGLRG NDSYVNLVQK KIDKHLSQGH VVLGVPSSMC PVITDGVKPG  780
DVSLEISRSM PMAASMAKCH LCSRQALKYP RSAVRTFLYR PAMLTMMGVA VVCVCVGILL  840
HTLPKVYAAP TFRWELLERG AILPDR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	1e-15	104	160	1	84	squamosa promoter binding protein-like 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00633	PBM	Transfer from PK06791.1	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_23643A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002466159.1	0.0	squamosa promoter-binding-like protein 6
Refseq	XP_025793312.1	0.0	squamosa promoter-binding-like protein 6
Swissprot	Q75LH6	0.0	SPL6_ORYSJ; Squamosa promoter-binding-like protein 6
TrEMBL	A0A3Q8ANR7	0.0	A0A3Q8ANR7_BAMML; Squamosa-promoter binding protein-like protein
STRING	Sb01g002530.1	0.0	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1998	38	92

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47070.1	1e-150	squamosa promoter binding protein-like 1

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_23643A

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]