PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_23575A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

HB-other

Protein Properties

Length: 1102aa MW: 123437 Da PI: 7.5051

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_23575A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	39.1	1.3e-12	14	66	5	57
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 t+ ++ q++ Le+ + + +yp+ ++ + A+++gLt +qV++WF+ rR ke+k Oropetium_20150105_23575A 14 TKKSPLQIKMLEKIYTEVQYPKPGDMVRYATSVGLTYNQVRIWFKERRRKERK 66 566899*********************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	14.155	7	67	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.1E-12	8	68	IPR009057	Homeodomain-like
SMART	SM00389	5.0E-12	9	71	IPR001356	Homeobox domain
CDD	cd00086	1.66E-6	14	57	No hit	No description
Pfam	PF00046	6.8E-10	14	66	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.1E-12	14	70	IPR009057	Homeodomain-like
PROSITE profile	PS50827	9.832	370	429	IPR018501	DDT domain
SMART	SM00571	1.0E-5	370	429	IPR018501	DDT domain
Pfam	PF02791	9.9E-7	373	424	IPR018501	DDT domain
Pfam	PF15612	1.8E-5	650	679	IPR028942	WHIM1 domain
Pfam	PF15613	2.8E-6	775	814	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1102 aa Download sequence Send to blast
MVNILGAKRQ NAGTKKSPLQ IKMLEKIYTE VQYPKPGDMV RYATSVGLTY NQVRIWFKER 60 RRKERKEMEA IGAHTERQLS SRSSGPSNTS LYDHQAPISE SSSISTIGEE PTVRPQVLLH 120 KDYILNKIFR RDGPPLGREF DPLPQRARGN IRDVTSYHSS QNQRSVSKRK VMESTNQKST 180 AQCEDAVPVR KHGIGKGLMT VWHAMYSCNM ECQGGSSFID ETGCLRSLRP FDDCDGFEDQ 240 DNGKRIRVKS QNQVMSRKKL GKLSKPTLNK RKMPRSRVIV SKEHSTMDCH LSVDKSESSE 300 LQTEHVALVD DEELELSELQ AGPNPLRCSA HLSSSGRHGC PLCKDLLAKF PPQSLKMKQP 360 FSMKPWDSSP NMVKKLFQIV RFVYTHFGSI DIHPFTFDEF AQAFHDKDSL LLGQVHVGLL 420 KLLLLKSERG CDGVYVPRSS TDCRFLSFLN FVREQEFDVT FWSKSLNSLT WVEILRQVLV 480 ASGFGSKQHM NRDFFNKEKN QMVKYGLRPR TLKGELFALL SKKGSGGLKV SELAKYPEIV 540 DLSIPGPVEI EQLICLTLSS DITLFEKIAS AAYRLRVDPW IKGKEDASSE SENSGSVDDN 600 EDASSSDDES HGSQKISFEH ASTVARRKKQ KVVHENPNKC SEIDESYPGE RWLLGLMEGE 660 YSDLSIDEKL DCLVALIDVV SGAGSVPRLE EPQNLSHNTS KAQPHPSGGK IKKSTKPLFQ 720 SSDEPLNGPG SQRSLHSVEI ERKDLSGVAH GPQVVLLGSD RRADDPGHRR VYFESSEDGH 780 WEVVDAPQEL LSLLSVLDSR GTREAHLLAS LEKRQACLFE AMKKHMEDWN AIGLAASSDS 840 CRSETSGGGG ASPKRFSADG DSPVSEINAS GPMELTNSNL DLSSAIAIEI GRSGDEKVLI 900 WERLQAFDKW IWASFYSTLT AVKCGKKSFK ESLVRCESCH DLYWRDEKHC RICHSTFEVG 960 VDLEERYAVH LATCREPEVV HEMPSHKVLP SQLQALKAGI HAIEVSMPEV AFVGSWKKSA 1020 HKLWVKRLRR TSSLPELLQV LVDFVGAMDE DWLYKSSSSV SFSSYLDDIM VYFQTMPQTT 1080 SAVALWVVKL DALIAPYLDK S*

Sequence ? help Back to Top

Protein Sequence Length: 1102 aa Download sequence Send to blast

MVNILGAKRQ NAGTKKSPLQ IKMLEKIYTE VQYPKPGDMV RYATSVGLTY NQVRIWFKER  60
RRKERKEMEA IGAHTERQLS SRSSGPSNTS LYDHQAPISE SSSISTIGEE PTVRPQVLLH  120
KDYILNKIFR RDGPPLGREF DPLPQRARGN IRDVTSYHSS QNQRSVSKRK VMESTNQKST  180
AQCEDAVPVR KHGIGKGLMT VWHAMYSCNM ECQGGSSFID ETGCLRSLRP FDDCDGFEDQ  240
DNGKRIRVKS QNQVMSRKKL GKLSKPTLNK RKMPRSRVIV SKEHSTMDCH LSVDKSESSE  300
LQTEHVALVD DEELELSELQ AGPNPLRCSA HLSSSGRHGC PLCKDLLAKF PPQSLKMKQP  360
FSMKPWDSSP NMVKKLFQIV RFVYTHFGSI DIHPFTFDEF AQAFHDKDSL LLGQVHVGLL  420
KLLLLKSERG CDGVYVPRSS TDCRFLSFLN FVREQEFDVT FWSKSLNSLT WVEILRQVLV  480
ASGFGSKQHM NRDFFNKEKN QMVKYGLRPR TLKGELFALL SKKGSGGLKV SELAKYPEIV  540
DLSIPGPVEI EQLICLTLSS DITLFEKIAS AAYRLRVDPW IKGKEDASSE SENSGSVDDN  600
EDASSSDDES HGSQKISFEH ASTVARRKKQ KVVHENPNKC SEIDESYPGE RWLLGLMEGE  660
YSDLSIDEKL DCLVALIDVV SGAGSVPRLE EPQNLSHNTS KAQPHPSGGK IKKSTKPLFQ  720
SSDEPLNGPG SQRSLHSVEI ERKDLSGVAH GPQVVLLGSD RRADDPGHRR VYFESSEDGH  780
WEVVDAPQEL LSLLSVLDSR GTREAHLLAS LEKRQACLFE AMKKHMEDWN AIGLAASSDS  840
CRSETSGGGG ASPKRFSADG DSPVSEINAS GPMELTNSNL DLSSAIAIEI GRSGDEKVLI  900
WERLQAFDKW IWASFYSTLT AVKCGKKSFK ESLVRCESCH DLYWRDEKHC RICHSTFEVG  960
VDLEERYAVH LATCREPEVV HEMPSHKVLP SQLQALKAGI HAIEVSMPEV AFVGSWKKSA  1020
HKLWVKRLRR TSSLPELLQV LVDFVGAMDE DWLYKSSSSV SFSSYLDDIM VYFQTMPQTT  1080
SAVALWVVKL DALIAPYLDK S*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	59	66	RRRKERKE

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_23575A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014661208.1	0.0	homeobox-DDT domain protein RLT3 isoform X2
TrEMBL	A0A3L6TQS0	0.0	A0A3L6TQS0_PANMI; Uncharacterized protein
STRING	Pavir.Ib01030.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4556	33	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12750.1	0.0	Homeodomain-like transcriptional regulator

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_23575A