PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_23486A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

C2H2

Protein Properties

Length: 134aa MW: 15339.7 Da PI: 9.5933

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_23486A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.5	9.9e-05	24	46	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C++C+ +F+++ L H+++H Oropetium_20150105_23486A 24 YHCSKCSDTFRSPQALGGHMKKH 46 89********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	8.86E-6	21	49	No hit	No description
SMART	SM00355	0.0046	24	46	IPR015880	Zinc finger, C2H2-like
Pfam	PF13912	1.4E-8	24	47	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	10.18	24	51	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	26	46	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 134 aa Download sequence Send to blast
MEPGSTNGGS MIREMIPVLR QQLYHCSKCS DTFRSPQALG GHMKKHRNQV RPTALKIRDN 60 MAMKRTKITM ELLQPNMEFW SRYNNGNTKP DEIVFIPIKE HGSLHKEIES TESKKKDISE 120 EVEINSLDLT LKL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_23486A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP20809	6	6

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_23486A