 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Oropetium_20150105_23429A |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
|
| Family |
HB-other |
| Protein Properties |
Length: 214aa MW: 23925.2 Da PI: 9.7128 |
| Description |
HB-other family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Oropetium_20150105_23429A | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 17.2 | 8.5e-06 | 49 | 74 | 37 | 51 |
C...........TS-HHHHHHHHHHH CS
Homeobox 37 l...........gLterqVkvWFqNr 51
++ +qV++WFqN+
Oropetium_20150105_23429A 49 FtasragvagrvVIKPKQVRTWFQNH 74
5555555555449************9 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 214 aa
Download sequence Send
to blast |
MEGRRVDSTA PISFHFLPAE VAEMEEIVRQ LIDSIYPRRH VIYELAGKFT ASRAGVAGRV 60
VIKPKQVRTW FQNHYYGPRR KEAMETRRFA ANKHQASSSS VAPRAQARTI SGSKRMAKGQ 120
FVGGKMLTGA YEHNEELPFN SDALVHAIDR RRHGYSESSC KFLVRYEHDG TEEIVPLSKL 180
RPKVVYTHGL PEGSGVATRC TEAAPVIIEV DDD*
|
| Best hit in Arabidopsis thaliana ? help
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| Hit ID |
E-value |
Description |
| AT3G18380.1 | 7e-09 | sequence-specific DNA binding transcription factors;sequence-specific DNA binding |
