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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_23327A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | bHLH | ||||||||
Protein Properties | Length: 201aa MW: 21866.8 Da PI: 5.1077 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 11.8 | 0.00045 | 56 | 72 | 3 | 19 |
HHHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsa 19 +++ rE++RRd++N++ Oropetium_20150105_23327A 56 TSKACREKQRRDKLNDS 72 67889**********95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd14686 | 0.00241 | 97 | 128 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 201 aa Download sequence Send to blast |
MSLPPADGGG GDDWFLDCGI LDDLPAAACG AFPWDASPSS SNPSLRAGSS GSSRPTSKAC 60 REKQRRDKLN DSDATRMVIQ LRAEAQQLKD TNDSLEEKIK ELKAEKDELR EEKHKLKVEK 120 ESLEHQMKLM TATPAYMPHP TLMPAPFPQA PMAPFHPQGP AAGQKLMMPI VGYPGYPMWQ 180 FMTPSEVDTS KDSEACPPVA * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Plays a role in resistance to amide-linked indole-3-acetic acid (IAA) conjugates such as IAA-Leu and IAA-Phe. May regulate gene expression in response to metal homeostasis changes. {ECO:0000269|PubMed:17028341}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_23327A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025821110.1 | 1e-115 | transcription factor ILR3-like | ||||
Swissprot | Q9FH37 | 2e-47 | ILR3_ARATH; Transcription factor ILR3 | ||||
TrEMBL | A0A0A9E9E6 | 1e-123 | A0A0A9E9E6_ARUDO; Uncharacterized protein | ||||
STRING | Pavir.Fa02284.1.p | 1e-114 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2023 | 38 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G54680.1 | 7e-35 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_23327A |