PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_23269A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family bHLH
Protein Properties Length: 307aa    MW: 32159.8 Da    PI: 9.7455
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_23269AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.79.7e-092112461555
                                HHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                        HLH  15 riNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                +iN++f eL  ++P +     kK++Ka+iL  Av+Y+++Lq
  Oropetium_20150105_23269A 211 KINQRFIELSAVIPGL-----KKMDKATILGDAVNYVRELQ 246
                                8***************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.95E-9180250No hitNo description
PROSITE profilePS5088811.585196245IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-8205251IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-12210254IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.23E-11210254IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.1E-6211246IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MDDSSMFLQW AMNQLHQQNP AAAADAAGGV PAYPDGGGGS GGAGDREATA FPSLQALRYA  60
SGQSQQTQTA GAAAAVRARD LKVQVDHLTN SNSWSSGDSP GGAAMDYDAA AGWSHSPQTA  120
RGSRTTGLLG GGSSSRPVSW NFSAAAARPT DETGRGCDVV ALPDAGATVA RRLMGRRGGE  180
VEARRAPPLQ RRRHRGLFRT TSSRSAAEGE KINQRFIELS AVIPGLKKMD KATILGDAVN  240
YVRELQDKVK TLEKDGVHHA AGGTTIQSTV LVKKPCPMPD DEGRRPVVAY SSCRRSRPGC  300
QIAASCC
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_23269A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025808672.11e-88transcription factor bHLH25-like
RefseqXP_025808673.11e-88transcription factor bHLH25-like
RefseqXP_025808674.11e-88transcription factor bHLH25-like
RefseqXP_025808675.11e-88transcription factor bHLH25-like
TrEMBLA0A2S3HFP93e-87A0A2S3HFP9_9POAL; Uncharacterized protein
STRINGPavir.J30022.1.p5e-79(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92731143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.13e-14bHLH family protein