PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_23256A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family bHLH
Protein Properties Length: 437aa    MW: 45572.6 Da    PI: 7.9778
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_23256AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH15.14.3e-053273641254
                                HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                        HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                R +++ +++  L++l+ +      +K + a++L +++eYIk L
  Oropetium_20150105_23256A 327 RKEKLGDRITALQQLVSPF-----GKTDTASVLHETIEYIKFL 364
                                677888999*******998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.992315364IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.9E-9325386IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.72E-5325368No hitNo description
SuperFamilySSF474597.72E-12325385IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 437 aa     Download sequence    Send to blast
MADHQEMLHT AAAAAAAATG TTSHGHGHGA GVNWWNTAVS CSTDQLPAGG YSGGWSGTAD  60
GNSSRSGNAA SSESPGSNSF ATGGVSSVTF HESPAGVPGP AAVAVLQQPV AGNAFAAAAD  120
WSQPYYLDGS GFHGYMGSRN DQGRMVNAPS LMSPSSSNNN LMLPQQDPHD QNHQFLSNLG  180
LELLSSPTSP SGGFRSSSLL RSLTEPVAAV TKPLSSLGFQ QYHQQQTMNQ APPGNIREAL  240
QFSNIKTPFW NPSPAGFSAA EGAACFGTAR RSLGQSRSAS CLAEKSALEG AGDSSSVVIG  300
NKAKSDRTPL KRARTGTPSP LPTFKVRKEK LGDRITALQQ LVSPFGKTDT ASVLHETIEY  360
IKFLHEQVGS LSAPYLKTRQ QVPHLKKLRD DCSEAAVLIN GDLTGRGLCL VPISSTFAVA  420
SETPVDFWTP FGAAFR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_23256A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0612832e-60BT061283.1 Zea mays full-length cDNA clone ZM_BFb0131G07 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004972712.10.0transcription factor bHLH112
TrEMBLA0A368RHX50.0A0A368RHX5_SETIT; Uncharacterized protein
STRINGPavir.Fa02016.1.p1e-179(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22163787
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61660.32e-43bHLH family protein