PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_23168A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family MYB_related
Protein Properties Length: 316aa    MW: 33455.5 Da    PI: 8.8186
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_23168AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.82.2e-07256298343
                                SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHH CS
            Myb_DNA-binding   3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksr 43 
                                +W++ +d  l++a k+++++   +W+++a+ ++ g+t   c  r
  Oropetium_20150105_23168A 256 AWSAGDDRALLNALKEFPKDtamRWEKVAASVP-GKTKAACMKR 298
                                7********************************.*******987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.237161208IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.4E-4162207IPR009057Homeodomain-like
SMARTSM007170.033165218IPR001005SANT/Myb domain
SuperFamilySSF466891.79E-7167210IPR009057Homeodomain-like
CDDcd001673.34E-5168210No hitNo description
PfamPF139213.0E-5169209No hitNo description
SMARTSM007173.0E-6253305IPR001005SANT/Myb domain
SuperFamilySSF466893.81E-9254302IPR009057Homeodomain-like
PROSITE profilePS500906.737255303IPR017877Myb-like domain
CDDcd001674.35E-7256303No hitNo description
Gene3DG3DSA:1.10.10.604.0E-5256302IPR009057Homeodomain-like
PfamPF002491.6E-6256298IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048767Biological Processroot hair elongation
GO:0005783Cellular Componentendoplasmic reticulum
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MEFIDDWDSQ SQPRARVVHS SANSTPSSSS TTGKPSPSLP HAAACAAAAI LLLAAAYYIP  60
ADYQVFTSLL VWIAASLLLA PFAPASATGG DISVGRGRLL PSPEPDQEPT SDHAPVPRRG  120
RRQKPTPPPP SRPSDPVTAP ARPAASPQQL REAAAVTDSG EKEEDAGEWT DQELEILRRQ  180
MVKHPAGEPQ RWEKIAAAFG GRRTPESVIR AAKSGAAAAT GGSFEQFLRK RKPLDPRAEV  240
ADADGNAGGA EGGDSAWSAG DDRALLNALK EFPKDTAMRW EKVAASVPGK TKAACMKRVT  300
ELKRDFRSSK SAVCY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1227232LRKRKP
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_23168A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002443901.11e-138dnaJ homolog subfamily C member 2
RefseqXP_021320123.11e-138dnaJ homolog subfamily C member 2
RefseqXP_021320124.11e-138dnaJ homolog subfamily C member 2
RefseqXP_021320125.11e-138dnaJ homolog subfamily C member 2
TrEMBLB6T5P41e-139B6T5P4_MAIZE; Dnajc2 protein
STRINGSb07g004030.11e-138(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP103112731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45420.12e-46MYB_related family protein