PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_22939A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family bHLH
Protein Properties Length: 360aa    MW: 39180.3 Da    PI: 6.9601
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_22939AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.55.6e-09166208754
                                HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                        HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                + E++RR+r+ +++  L  l+P++     +K + a++   A+eYI++L
  Oropetium_20150105_22939A 166 KKEKQRRQRLSEKYTALMLLIPNR-----TKDDRATVISDAIEYIQEL 208
                                57*********************9.....9****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.722159208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-5165214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-6166208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-8168226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.01E-10168229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.20E-7168208No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MYHPQCELLM GHDALDLDAG HPQLSVSSVP TTELSFQLLH SLDAAAQQPH VDYFFGGGAE  60
HHQSAAVQFE QLVAAPPGNH HTMNMLRDCC NGGHYPATDE PSFLRGTRAG AALVFGAPKD  120
ESAAAYMAGT FQNSPPPPRA TGGGRKRSRA AMVGGFHGGL VNGVEKKEKQ RRQRLSEKYT  180
ALMLLIPNRT KDDRATVISD AIEYIQELGR TVEELTLLVE KKRRRRELHG DVVDATSVAV  240
AHGGAEAESS EGEVVAPLPA VQQLQPIRST YIQRKSKDTF VDVRIVEEEV NIKLTKRRRD  300
GCLAAASRAM DELRLDLVHL SGGKIGDCHI YMFNTKIHPG SSVFASAVAS RLIEVVDEY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1143149GRKRSRA
2220225KKRRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the E-box-containing promoter regions of the transcription factors TDR and EAT1, activating their expression. May have a role in specifying the cell pattern of the inner anther walls and functioning in meiosis progression. Required for male reproduction (PubMed:24755456). Acts downstream of UDT1 and GAMYB, but upstream of TDR1 and EAT1 in pollen development (PubMed:24894043). {ECO:0000269|PubMed:24755456, ECO:0000269|PubMed:24894043}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_22939A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025815629.11e-170transcription factor TIP2-like
SwissprotQ5JNS01e-148TIP2_ORYSJ; Transcription factor TIP2
TrEMBLA0A1E5UWC61e-173A0A1E5UWC6_9POAL; Transcription factor TIP2
STRINGPavir.Eb01270.1.p1e-175(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19043796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06170.29e-31bHLH family protein