PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_22912A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family MYB_related
Protein Properties Length: 302aa    MW: 33053.1 Da    PI: 7.9418
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_22912AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.52.7e-12555146
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
            Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                               ++rWT eE+  l  +v+++G g+W+tI +          R+  ++k++w++
  Oropetium_20150105_22912A  5 KQRWTSEEEAALRAGVAKHGVGNWRTILKDPEfsstlRYRSNVDIKDKWRN 55
                               79***********************************99***********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.526161IPR017930Myb domain
SuperFamilySSF466896.5E-16259IPR009057Homeodomain-like
SMARTSM007172.1E-8459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-14556IPR009057Homeodomain-like
PfamPF002495.0E-9556IPR001005SANT/Myb domain
CDDcd116601.60E-20657No hitNo description
SuperFamilySSF467851.58E-15119200IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150421.456119190IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.101.2E-15120193IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM005261.6E-9120185IPR005818Linker histone H1/H5, domain H15
PfamPF005387.6E-9127182IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0000786Cellular Componentnucleosome
GO:0005730Cellular Componentnucleolus
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
GO:0033613Molecular Functionactivating transcription factor binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0070491Molecular Functionrepressing transcription factor binding
GO:1990841Molecular Functionpromoter-specific chromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MGVPKQRWTS EEEAALRAGV AKHGVGNWRT ILKDPEFSST LRYRSNVDIK DKWRNMNVIV  60
TASGSREKVK SAVKKVKSAP KNHDHSTAIS TVASDGDDEI VDAKPIASVS SEAWNSSVSK  120
KSQARLDNII MEAVKSLNEP TGSHKTSIAN YIEEQYWPPS DFDHILSSKL KELTDSGKLM  180
KVHRRYRIAP SSQYSEGRRP KMLLLEDVQR ESFKVQSDDG KPFTRTQIDA ELAHMTTMTS  240
EEAAEAAARA VAEAEAILAE AEAAAREAEA AEAEARAAQA FAEAAALTLK NRNTVKLMGQ  300
A*
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats, but may also bind to the single telomeric strand. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00607ChIP-seqTransfer from AT1G49950Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_22912A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817366.11e-141single myb histone 5-like
RefseqXP_025817367.11e-141single myb histone 5-like
RefseqXP_025817368.11e-141single myb histone 5-like
SwissprotC0HIA31e-130SMH6_MAIZE; Single myb histone 6
TrEMBLA0A2T7DRF91e-141A0A2T7DRF9_9POAL; Uncharacterized protein
STRINGPavir.Eb00490.1.p1e-139(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132438110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.38e-65telomere repeat binding factor 1
Publications ? help Back to Top
  1. Soderlund C, et al.
    Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs.
    PLoS Genet., 2009. 5(11): p. e1000740
    [PMID:19936069]