PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_22902A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family TALE
Protein Properties Length: 274aa    MW: 30353.3 Da    PI: 5.4449
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_22902AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.64.9e-092302622355
                                SS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
                   Homeobox  23 rypsaeereeLAkklgLterqVkvWFqNrRake 55 
                                +yp++e++  LA+ +gL+ +q+ +WF N+R ++
  Oropetium_20150105_22902A 230 PYPTEEDKVTLASMTGLDPKQINNWFINQRKRH 262
                                8*****************************885 PP
2ELK34.44.8e-12182203122
                        ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                                ELK++Ll+KYsg+L+ L++EF+
  Oropetium_20150105_22902A 182 ELKDMLLKKYSGCLSRLRSEFL 203
                                9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012555.6E-223781IPR005540KNOX1
PfamPF037906.5E-213978IPR005540KNOX1
SMARTSM012563.1E-2786137IPR005541KNOX2
PfamPF037917.9E-2490136IPR005541KNOX2
PROSITE profilePS5121310.441182202IPR005539ELK domain
PfamPF037895.4E-9182203IPR005539ELK domain
SMARTSM011882.0E-6182203IPR005539ELK domain
PROSITE profilePS5007112.228202265IPR001356Homeobox domain
SMARTSM003891.6E-13204269IPR001356Homeobox domain
SuperFamilySSF466894.71E-19204268IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.4E-27207267IPR009057Homeodomain-like
CDDcd000861.77E-12214266No hitNo description
PfamPF059201.2E-17222261IPR008422Homeobox KN domain
PROSITE patternPS000270240263IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0009736Biological Processcytokinin-activated signaling pathway
GO:0010094Biological Processspecification of carpel identity
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MEDLYSIHPG IPRVGGVVMS EASVVGVGGP SPADLTELMK AQIASHPRYP SLLSAYIECR  60
KVGAPPEVAS LLEEISRDRR AGGGSGAGEI GVDPELDEFM DTYCRVLVRY KEELSRPFDE  120
AASFLSSIQT QLSNLCSAGS SPVATATHSD EMMCSSEDEQ CSGDTDAADI GQEQSSRLAD  180
HELKDMLLKK YSGCLSRLRS EFLKKRKKGK LPKDARLVLL DWWNAHYRWP YPTEEDKVTL  240
ASMTGLDPKQ INNWFINQRK RHWKPSEDMR SVL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1197206LRSEFLKKRK
2203207KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in shoot formation during early embryogenesis. {ECO:0000269|PubMed:10488233}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00670PBMTransfer from GRMZM2G087741Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_22902A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002455513.11e-171homeobox protein knotted-1-like 1
SwissprotQ9FP291e-140KNOS1_ORYSJ; Homeobox protein knotted-1-like 1
TrEMBLC5XI601e-170C5XI60_SORBI; Uncharacterized protein
STRINGSb03g012480.11e-171(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16983892
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23380.13e-82KNOTTED1-like homeobox gene 6
Publications ? help Back to Top
  1. Park SH, et al.
    A Ds-insertion mutant of OSH6 (Oryza sativa Homeobox 6) exhibits outgrowth of vestigial leaf-like structures, bracts, in rice.
    Planta, 2007. 227(1): p. 1-12
    [PMID:17624547]