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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Oropetium_20150105_22887A |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
|
| Family |
MYB_related |
| Protein Properties |
Length: 188aa MW: 20091.4 Da PI: 9.7923 |
| Description |
MYB_related family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Oropetium_20150105_22887A | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 58.1 | 2.1e-18 | 14 | 72 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT............-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg............tWktIartmgkgRtlkqcksrwqkyl 48
+grWT+eEde l ++++++G g +W++Ia +++ gRt++++k++w+++l
Oropetium_20150105_22887A 14 KGRWTKEEDETLTRYIQEHGEGlwrtlpknagllRWSLIAGHLP-GRTDNEIKNYWNSHL 72
79******************************************.************986 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 188 aa
Download sequence Send
to blast |
MGRAPCCEKV GLKKGRWTKE EDETLTRYIQ EHGEGLWRTL PKNAGLLRWS LIAGHLPGRT 60
DNEIKNYWNS HLSRRASDFR GGSDGVVVNV DLSKLPGGGK RRGGRTSRGG AAAAGKGGNV 120
KKGNGKGKAK EKVMDVAPPR KAKGEQEQMD TNGPTPSSQQ CGEEEHASAS GVTSDGLEDG 180
PLGLNEEM
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor postulated to regulate the biosynthetic pathway of a flavonoid-derived pigment in certain floral tissues. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AF521880 | 1e-41 | AF521880.1 Zea mays R2R3 Myb transcription factor MYB-IF35 mRNA, complete cds. |
| GenBank | BT039901 | 1e-41 | BT039901.1 Zea mays full-length cDNA clone ZM_BFc0050D21 mRNA, complete cds. |
| GenBank | BT063308 | 1e-41 | BT063308.1 Zea mays full-length cDNA clone ZM_BFc0051B20 mRNA, complete cds. |
| GenBank | BT088200 | 1e-41 | BT088200.1 Zea mays full-length cDNA clone ZM_BFc0061H17 mRNA, complete cds. |
| GenBank | HQ858721 | 1e-41 | HQ858721.1 Zea mays clone UT1188 MYB-IF35 transcription factor mRNA, partial cds. |
| GenBank | HQ858768 | 1e-41 | HQ858768.1 Zea mays clone UT1749 MYB transcription factor mRNA, partial cds. |
| Publications
? help Back to Top |
- Robbins ML,Sekhon RS,Meeley R,Chopra S
A Mutator transposon insertion is associated with ectopic expression of a tandemly repeated multicopy Myb gene pericarp color1 of maize.
Genetics, 2008. 178(4): p. 1859-74
[PMID:18430921] - Sidorenko L,Chandler V
RNA-dependent RNA polymerase is required for enhancer-mediated transcriptional silencing associated with paramutation at the maize p1 gene.
Genetics, 2008. 180(4): p. 1983-93
[PMID:18845841] - Robbins ML,Wang P,Sekhon RS,Chopra S
Gene structure induced epigenetic modifications of pericarp color1 alleles of maize result in tissue-specific mosaicism.
PLoS ONE, 2009. 4(12): p. e8231
[PMID:20011605] - Rhee Y,Sekhon RS,Chopra S,Kaeppler S
Tissue culture-induced novel epialleles of a Myb transcription factor encoded by pericarp color1 in maize.
Genetics, 2010. 186(3): p. 843-55
[PMID:20823340] - Morohashi K, et al.
A genome-wide regulatory framework identifies maize pericarp color1 controlled genes.
Plant Cell, 2012. 24(7): p. 2745-64
[PMID:22822204]
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