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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Oropetium_20150105_22775A |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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| Family |
NAC |
| Protein Properties |
Length: 227aa MW: 24841.3 Da PI: 5.8502 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Oropetium_20150105_22775A | genome | JGI | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 32.7 | 2.1e-10 | 28 | 161 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......leleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknr. 76
lppG+rF+P l+ L ++ + + + ++ + ++iy v P+ Lp k+ + f +++ a + r
Oropetium_20150105_22775A 28 LPPGVRFRPGVPCLLEALLIPRSLSGHtdpsghIARGDIAEGIEIYPVRPEALPlPKC-----NRGFDRPAAAVLAGSGTDARl 106
79*****************9987776646665444434667779*********93233.....233545555555555556665 PP
NAM 77 atksgyWkatgkdkevlsk..kgelvglkktLvfykg.rapkgektdWvmheyrl 128
+++ g+W g++ke + + + ++ +k +vfyk ra + + W m+e rl
Oropetium_20150105_22775A 107 VAAGGIWLPYGNEKECYIRedGAAVHAFRKHFVFYKPaRAGGHKLSAWRMEELRL 161
999************9998656667899*******872444455699*****987 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 227 aa
Download sequence Send
to blast |
MQHCPEAQAL RDPSHPMAQQ PQPATEMLPP GVRFRPGVPC LLEALLIPRS LSGHTDPSGH 60
IARGDIAEGI EIYPVRPEAL PLPKCNRGFD RPAAAVLAGS GTDARLVAAG GIWLPYGNEK 120
ECYIREDGAA VHAFRKHFVF YKPARAGGHK LSAWRMEELR LDETAPAFRG VTFHPSAKDL 180
VILKVYIDSE IPDEEPLIEY YTSNSDDEDK EITMRDAIAA LSPRVA*
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