PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

M-type_MADS

Protein Properties

Length: 248aa MW: 27475.4 Da PI: 9.585

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_22686A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	89.2	2.2e-28	75	124	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ri+n++ rqvtfskRrngi+KKA EL +LCdaev +iifsstg+lyey+s Oropetium_20150105_22686A 75 RIDNSTSRQVTFSKRRNGIFKKARELAILCDAEVGLIIFSSTGRLYEYAS 124 8***********************************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	31.959	66	126	IPR002100	Transcription factor, MADS-box
SMART	SM00432	3.6E-40	66	125	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	3.92E-32	67	147	IPR002100	Transcription factor, MADS-box
CDD	cd00265	2.41E-44	67	134	No hit	No description
PRINTS	PR00404	3.7E-28	68	88	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	68	122	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.3E-25	75	122	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.7E-28	88	103	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.7E-28	103	124	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 248 aa Download sequence Send to blast
PPAKFTNPSV IVFLSTPPNN SLLSEKAAGS SPSRAPAGSH ISSLLLPYCC LLVLPRARLF 60 RSLRTMGRGK IVIRRIDNST SRQVTFSKRR NGIFKKAREL AILCDAEVGL IIFSSTGRLY 120 EYASTSMKSL IDRYGRMKEE EEHVANLNSE LKGGSKLETT TAQLARKSSG SLIQQDNMEL 180 HKKVNLIRQE NMDLYKKLCE KEATSEVSHD SLTPYNFAVV DNDNVHIELN TPPQENDAEQ 240 IAQPKLG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5f28_A	9e-21	66	146	1	81	MEF2C
5f28_B	9e-21	66	146	1	81	MEF2C
5f28_C	9e-21	66	146	1	81	MEF2C
5f28_D	9e-21	66	146	1	81	MEF2C
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_22686A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK370732	8e-71	AK370732.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2116B15.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021319518.1	5e-80	MADS-box transcription factor 27 isoform X1
Swissprot	Q6EP49	7e-72	MAD27_ORYSJ; MADS-box transcription factor 27
TrEMBL	A0A0E0PA49	3e-90	A0A0E0PA49_ORYRU; Uncharacterized protein
STRING	ORUFI04G16410.1	4e-91	(Oryza rufipogon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP614	35	130

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57230.1	5e-49	AGAMOUS-like 16

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_22686A

Publications ? help Back to Top
Puig J, et al. Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice. Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70 [PMID:23466806] Yu C, et al. The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice. PLoS ONE, 2014. 9(8): p. e105597 [PMID:25140876]