PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

Nin-like

Protein Properties

Length: 1072aa MW: 118401 Da PI: 5.5902

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_22641A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	89.6	2.5e-28	597	647	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek++sle+l+k+F++++k+AAk+Lgvc+T+LKriCRq+GI+RWP+Rkik++ Oropetium_20150105_22641A 597 EKTVSLEELRKHFAGSLKEAAKNLGVCPTTLKRICRQHGINRWPSRKIKKV 647 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.473	586	667	IPR003035	RWP-RK domain
Pfam	PF02042	5.2E-26	599	647	IPR003035	RWP-RK domain
SuperFamily	SSF54277	5.05E-21	814	904	No hit	No description
Gene3D	G3DSA:3.10.20.240	3.0E-23	815	900	No hit	No description
PROSITE profile	PS51745	19.498	818	901	IPR000270	PB1 domain
SMART	SM00666	1.7E-21	818	901	IPR000270	PB1 domain
Pfam	PF00564	1.1E-14	819	900	IPR000270	PB1 domain
CDD	cd06407	8.45E-38	819	900	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1072 aa Download sequence Send to blast
MEPNEEDVML GCGGRMEEVV VGDMDLMDEL FLAAPGFDFS DFSQPGACAS PAAFSPLFDI 60 CSTTTTATPP PPQDDRDEPE KPDRAGDAGP PLRPWLFQPR QEVEAPVKDR LRRALERIAS 120 LSQSQPGELL AQVWVPTLIG GRQVLTTCGQ PFWLDRRNQR LASYRTVSMK YQFSADESSR 180 AELGLPGRVF VGRVPEWTPD VRYFSTEEYP RVHHAQHFDI RGSVALPIFE PKSRVCLGVV 240 ELVMTTQKVN YNAEIENICS ALKEVDLRST DVSRHPLTKV VDTSYRAVLP EIVDVLSTVC 300 ERHKLPLAQA WIPCACQAKR GSRHTDEKFK YCVSTVDEAC YVRDPSVRGF HQACSEHHLF 360 RGEGVVGKAF GTNEPCFSPD VTAYSKVQYP LSHHAKLFNL KAAVAIRLRS VRTGSLDFVL 420 EFFLPVDCVK DEEQREMLNS LSITIQQICY TLRVVSLKEV VNEGSIETSA LTPPEFYAKS 480 SNGNLDEICS SIDVPARTTS LETSEEVSSW IASLVDAQNK GVKEMDGDLP FGFSKQEDEG 540 FSVTAGWHTS PVLGPEDGIF SGFKQHEEYE VKEVNCSGRP SSLNLEKAGE KRRTKTEKTV 600 SLEELRKHFA GSLKEAAKNL GVCPTTLKRI CRQHGINRWP SRKIKKVGHS LKKLQMVIDS 660 VHGAEGTVQL SSLYENFTKT SWSEGELQGD ANYPWSDQKA HLEPSVPDQQ CEGRFTSHTS 720 GSNSLSPTCS QSSNSSHDCS SGSKSQQHAS PQQLAIKQEV CMEENQNFTI LKTSNNAELH 780 MLTEERPVTL SRPHSQMLLS EQKAIDNIPS IQNSKSDSLK VKAMYGEERC VFRLQPCWGF 840 NKLKEEIIRR FSIAKENYVD LKYLDDESEW VLLTCDADLV ECIDVYKSSS AQTVKILVNP 900 NVQPVLELKV FEQSTWSGGK QGDSTYIRLF QSECRNSGNF SSLFFMLSKG KGLDILERGD 960 DVVHGWPALG IAGEALVCEP GGPERSLGRV AAAEAPVHEA RQLPAAAAGA GEDRPRPLHQ 1020 VQLVARPGVL RTSAEVVTEM PASVPALQSA CTEIGTSEPA SLPVATYSGA A*

Sequence ? help Back to Top

Protein Sequence Length: 1072 aa Download sequence Send to blast

MEPNEEDVML GCGGRMEEVV VGDMDLMDEL FLAAPGFDFS DFSQPGACAS PAAFSPLFDI  60
CSTTTTATPP PPQDDRDEPE KPDRAGDAGP PLRPWLFQPR QEVEAPVKDR LRRALERIAS  120
LSQSQPGELL AQVWVPTLIG GRQVLTTCGQ PFWLDRRNQR LASYRTVSMK YQFSADESSR  180
AELGLPGRVF VGRVPEWTPD VRYFSTEEYP RVHHAQHFDI RGSVALPIFE PKSRVCLGVV  240
ELVMTTQKVN YNAEIENICS ALKEVDLRST DVSRHPLTKV VDTSYRAVLP EIVDVLSTVC  300
ERHKLPLAQA WIPCACQAKR GSRHTDEKFK YCVSTVDEAC YVRDPSVRGF HQACSEHHLF  360
RGEGVVGKAF GTNEPCFSPD VTAYSKVQYP LSHHAKLFNL KAAVAIRLRS VRTGSLDFVL  420
EFFLPVDCVK DEEQREMLNS LSITIQQICY TLRVVSLKEV VNEGSIETSA LTPPEFYAKS  480
SNGNLDEICS SIDVPARTTS LETSEEVSSW IASLVDAQNK GVKEMDGDLP FGFSKQEDEG  540
FSVTAGWHTS PVLGPEDGIF SGFKQHEEYE VKEVNCSGRP SSLNLEKAGE KRRTKTEKTV  600
SLEELRKHFA GSLKEAAKNL GVCPTTLKRI CRQHGINRWP SRKIKKVGHS LKKLQMVIDS  660
VHGAEGTVQL SSLYENFTKT SWSEGELQGD ANYPWSDQKA HLEPSVPDQQ CEGRFTSHTS  720
GSNSLSPTCS QSSNSSHDCS SGSKSQQHAS PQQLAIKQEV CMEENQNFTI LKTSNNAELH  780
MLTEERPVTL SRPHSQMLLS EQKAIDNIPS IQNSKSDSLK VKAMYGEERC VFRLQPCWGF  840
NKLKEEIIRR FSIAKENYVD LKYLDDESEW VLLTCDADLV ECIDVYKSSS AQTVKILVNP  900
NVQPVLELKV FEQSTWSGGK QGDSTYIRLF QSECRNSGNF SSLFFMLSKG KGLDILERGD  960
DVVHGWPALG IAGEALVCEP GGPERSLGRV AAAEAPVHEA RQLPAAAAGA GEDRPRPLHQ  1020
VQLVARPGVL RTSAEVVTEM PASVPALQSA CTEIGTSEPA SLPVATYSGA A*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_22641A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012698190.1	0.0	protein NLP1 isoform X2
Swissprot	Q10S83	0.0	NLP1_ORYSJ; Protein NLP1
TrEMBL	A0A3L6TQF2	0.0	A0A3L6TQF2_PANMI; Protein NLP1-like isoform X2
STRING	Si034133m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11025	32	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35270.1	0.0	Nin-like family protein

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_22641A

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]