PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_22490A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

M-type_MADS

Protein Properties

Length: 146aa MW: 16523.8 Da PI: 10.248

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_22490A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	35	1.8e-11	13	53	3	43
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 ie+++ r+ t+ kRr+g+ K LS+L++a+va+++ +++ Oropetium_20150105_22490A 13 IESERERNLTYFKRRAGLYKSIADLSTLTGAKVALVVEAEN 53 9***********************************98776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	6.8E-4	1	68	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	2.49E-12	7	56	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	12.699	10	53	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	9.3E-14	13	53	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 146 aa Download sequence Send to blast
MNRRIRRSGI NYIESERERN LTYFKRRAGL YKSIADLSTL TGAKVALVVE AENKDKTVEE 60 KRAKVSKSRL QEILETLESA KFISDDVEDL GAHELRNMLH RLLMVNGQVD NQVKAATVPP 120 NQNLAHSDNF NLNPVVPPQR RTIVN*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_22490A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3089	22	76

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15800.2	7e-07	MIKC_MADS family protein

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_22490A